Email l.a.kelley@imperial.ac.uk Description P45546 Date Thu Jan 5 12:03:05 GMT 2012 Unique Job ID 720959e92aeae24e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ww9B_ 32.7 30 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 2 c2jx0A_ 29.5 15 PDB header:cell adhesion, signaling protein Chain: A: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: the paxillin-binding domain (pbd) of g protein coupled2 receptor (gpcr)-kinase (grk) interacting protein 1 (git1) 3 d1y9ia_ 26.6 28 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 4 d1rfza_ 26.1 28 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 5 c3thgA_ 20.5 17 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 6 c2vy2A_ 18.8 43 PDB header:transcription Chain: A: PDB Molecule:protein leafy; PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter 7 c2b99A_ 17.6 23 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase; PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor 8 c3rlbA_ 16.5 13 PDB header:thiamine-binding protein Chain: A: PDB Molecule:thit; PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter 9 c3dh4A_ 16.3 9 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 10 d1qgta_ 15.8 39 Fold:Hepatitis B viral capsid (hbcag) Superfamily:Hepatitis B viral capsid (hbcag) Family:Hepatitis B viral capsid (hbcag) 11 d1o82a_ 15.4 29 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 12 c2kbcB_ 15.1 31 PDB header:hormone Chain: B: PDB Molecule:insl5_b-chain; PDBTitle: solution structure of human insulin-like peptide 5 (insl5) 13 d1zs3a1 14.6 4 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 14 c2xq2A_ 14.5 13 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 15 d1ufya_ 14.5 33 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 16 c2o01I_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 17 c3lw5I_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i 18 c2wseI_ 14.2 55 PDB header:photosynthesis Chain: I: PDB Molecule:photosystem i reaction center subunit viii; PDBTitle: improved model of plant photosystem i 19 c2l81A_ 14.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:enhancer of filamentation 1; PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a 20 d2hjqa2 13.6 25 Fold:GINS/PriA/YqbF domain Superfamily:PriA/YqbF domain Family:YqbF N-terminal domain-like 21 c1unuB_ not modelled 13.5 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 22 c1unuA_ not modelled 13.5 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 23 d1xmec1 not modelled 13.3 26 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 24 d1xhoa_ not modelled 13.1 43 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 25 c1uo3B_ not modelled 13.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 26 c2cceA_ not modelled 12.5 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 27 c2cceB_ not modelled 12.5 23 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 28 c2ccfA_ not modelled 12.5 23 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 29 c2rrhA_ not modelled 12.2 36 PDB header:hormone Chain: A: PDB Molecule:vip peptides; PDBTitle: nmr structure of vasoactive intestinal peptide in methanol 30 c2v8wA_ not modelled 11.8 33 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e; PDBTitle: crystallographic and mass spectrometric characterisation of2 eif4e with n7-cap derivatives 31 d1r0ka1 not modelled 11.7 16 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 32 c2la2A_ not modelled 11.7 12 PDB header:antimicrobial protein Chain: A: PDB Molecule:cecropin; PDBTitle: solution structure of papiliocin isolated from the swallowtail2 butterfly, papilio xuthus 33 c2ky5A_ not modelled 11.3 29 PDB header:cell adhesion Chain: A: PDB Molecule:platelet endothelial cell adhesion molecule; PDBTitle: solution structure of the pecam-1 cytoplasmic tail with dpc 34 c1gcmA_ not modelled 11.0 23 PDB header:transcription regulation Chain: A: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 35 c1piqA_ not modelled 10.8 23 PDB header:dna binding protein Chain: A: PDB Molecule:protein (general control protein gcn4-piq); PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues 36 c1ij1C_ not modelled 10.8 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 37 c1ij1B_ not modelled 10.8 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 38 c1ij1A_ not modelled 10.8 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12)2 position 39 d2j9ga2 not modelled 10.8 22 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 40 d2pyqa1 not modelled 10.7 24 Fold:Jann4075-like Superfamily:Jann4075-like Family:Jann4075-like 41 c1z23A_ not modelled 10.7 26 PDB header:cell adhesion Chain: A: PDB Molecule:crk-associated substrate; PDBTitle: the serine-rich domain from crk-associated substrate2 (p130cas) 42 c2q7cC_ not modelled 10.7 23 PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 43 c2npsA_ not modelled 10.5 12 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex 44 c2affB_ not modelled 10.4 29 PDB header:cell cycle Chain: B: PDB Molecule:mki67 fha domain interacting nucleolar phosphoprotein; PDBTitle: the solution structure of the ki67fha/hnifk(226-269)3p complex 45 c1gcmB_ not modelled 10.4 23 PDB header:transcription regulation Chain: B: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 46 c3aqpB_ not modelled 10.4 20 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 47 d1zy9a2 not modelled 10.3 33 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:YicI catalytic domain-like 48 c1xhoB_ not modelled 10.3 43 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 49 c1uo5B_ not modelled 10.2 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 50 c1uo5A_ not modelled 10.2 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 51 c2wpzA_ not modelled 10.2 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 52 d1q0qa1 not modelled 10.1 6 Fold:Left-handed superhelix Superfamily:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain Family:1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 53 c1gcmC_ not modelled 10.0 23 PDB header:transcription regulation Chain: C: PDB Molecule:gcn4p-ii; PDBTitle: gcn4 leucine zipper core mutant p-li 54 c2jo1A_ not modelled 9.9 24 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 55 c1gclD_ not modelled 9.9 27 PDB header:leucine zipper Chain: D: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 56 c1gclA_ not modelled 9.9 27 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 57 c1gclC_ not modelled 9.9 27 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 58 c1gclB_ not modelled 9.9 27 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4; PDBTitle: gcn4 leucine zipper core mutant p-li 59 c3iz6T_ not modelled 9.9 17 PDB header:ribosome Chain: T: PDB Molecule:40s ribosomal protein s21 (s21e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 c2d2pA_ not modelled 9.8 36 PDB header:hormone/growth factor Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: the solution structure of micelle-bound peptide 61 c1untA_ not modelled 9.7 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 62 c2wpzB_ not modelled 9.7 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 63 c1t0oA_ not modelled 9.6 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose 64 c1unxA_ not modelled 9.6 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 65 c3a23A_ not modelled 9.5 13 PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose 66 c1unwB_ not modelled 9.4 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 67 c1uo2A_ not modelled 9.4 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 68 c1w5iA_ not modelled 9.4 27 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 69 c2wpzC_ not modelled 9.4 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 70 c1untB_ not modelled 9.3 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c2voyG_ not modelled 9.3 17 PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 72 d2cs0a1 not modelled 9.2 29 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 73 c3kinA_ not modelled 9.2 29 PDB header:motor protein Chain: A: PDB Molecule:kinesin heavy chain; PDBTitle: kinesin (dimeric) from rattus norvegicus 74 c2kncB_ not modelled 9.2 27 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 75 c2jgcA_ not modelled 9.2 28 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e type PDBTitle: structure of the human eif4e homologous protein, 4ehp2 without ligand bound 76 c3lrmB_ not modelled 9.0 20 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase 1; PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose 77 d2bz1a1 not modelled 9.0 18 Fold:RibA-like Superfamily:RibA-like Family:RibA-like 78 c1uo2B_ not modelled 9.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 79 c1w5iB_ not modelled 9.0 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: aba does not affect topology of pli. 80 c1rb1C_ not modelled 9.0 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 81 c3k7zC_ not modelled 9.0 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 82 c1ij0C_ not modelled 8.9 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 83 c1ij0A_ not modelled 8.9 19 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 84 c1ij0B_ not modelled 8.9 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position 85 d1chma1 not modelled 8.9 16 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 86 c2f7nA_ not modelled 8.9 12 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding stress response protein, dps family; PDBTitle: structure of d. radiodurans dps-1 87 d1xrda1 not modelled 8.9 27 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 88 c1rb4C_ not modelled 8.8 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 89 d1w2fa_ not modelled 8.7 21 Fold:SAICAR synthase-like Superfamily:SAICAR synthase-like Family:Inositol polyphosphate kinase (IPK) 90 c1unxB_ not modelled 8.7 27 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 91 c1zy9A_ not modelled 8.7 33 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution 92 c1swiB_ not modelled 8.6 19 PDB header:leucine zipper Chain: B: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 93 c1rb4A_ not modelled 8.6 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal automatic solution 94 c1swiC_ not modelled 8.6 19 PDB header:leucine zipper Chain: C: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 95 c1l2aD_ not modelled 8.6 43 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 96 d1l1ya_ not modelled 8.6 43 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 97 c2ysxA_ not modelled 8.5 25 PDB header:signaling protein Chain: A: PDB Molecule:signaling inositol polyphosphate phosphatase PDBTitle: solution structure of the human ship sh2 domain 98 c3nfqA_ not modelled 8.4 22 PDB header:transcription Chain: A: PDB Molecule:transcription factor iws1; PDBTitle: crystal structure of the conserved central domain of yeast spn1/iws1 99 c1l6nA_ not modelled 8.4 21 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein