Job Description P45546 Confidence 10.40% Date Thu Jan 5 12:03:05 GMT 2012 Rank 46 Aligned Residues 163 % Identity 20% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		D	V	L	G	S	L	G	E	L	S	S	P	V	V	S	A	F	A	L	F	P	L	V	A	I	F	Y	Q	F	G	W	K	Q	S	L	I	A	A	V	V	V	L	M	T	R	V	V	.	V	V	R	Y	F	P	H	L	N	P	E	S	I	E	I	F	I	G	M	V	M	L	L	G	I	A	I	T	H	D	L	R
Query Conservation																																																	.
Alig confidence																																																	.																														.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	I	G	E	E	L	R	R	N	A	V	M	A	V	L	V	G	L	G	L	I	L	L	Y	V	A	F	R	F	D	W	T	F	G	V	A	S	I	L	A	V	A	H	D	V	A	I	V	A	G	M	Y	S	L	L	G	L	E	F	S	I	P	T	I	A	A	L	L	T	I	V	G	Y	S	I	N	D	.	.	.
Template Known Secondary structure																														S																											T																						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	D	E	N	D	I	D	A	S	G	L	S	V	F	E	E	R	T	S	R	I	I	K	N	L	P	Y	I	A	I	V	G	A	L	I	A	A	V	A	S	M	K	I	F	A	G	S	E	V	S	I	F	T	L	E	K	A	Y	S	A	G	V	T	P	E	Q	S	Q	T	L	I	N	Q	A	A	L	A	E	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	I	V	V	S	D	R	I	R	E	N	Q	K	L	L	R	H	L	P	Y	A	E	L	V	N	R	S	I	N	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	T	V	M	T	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																S	S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.																														.	670	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	G	L	G	F	V	P	L	I	A	T	T	A	L	A	T	G	V	Y	A	V	A	G	F	T	F	V	Y	A	V	D	Y	L	S	P	N	P	M	V	A	A	V	L	G	A	V	V	I	S	A	E
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		T	T	L	L	P	I	L	A	L	L	F	L	.	.	.	.	.	G	G	S	V	L	R	D	F	A	L	A	I	F	V	G	I	F	V	G	T	Y	S	S	I	Y	V	V	S	A	L	V	V	A	W	K
Template Known Secondary structure														.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.						690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions