Return to main results Retrieve Phyre Job Id

Job DescriptionP16703
Confidence100.00%DateThu Jan 5 11:35:48 GMT 2012
Rank19Aligned Residues290
% Identity18%Templated1tdja1
SCOP infoTryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes Tryptophan synthase beta subunit-like PLP-dependent enzymes
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAA
Query Conservation    
   

 


     
    
  
  
 
  




 
 
 
   
  
   
       

 




 
 


  
 
Alig confidence 





















































...






















Template Conservation    
      


     
    
  
  
 
  




 


 
   
      ...     

  



 
 
 
  
 
Template Sequence  APVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEE. . . QKAHGVITASAGNHAQGVAFSSA
Template Known Secondary structure 

GGGT





TTS
GGGSTTSSSTTTTTS...S
SSS

SSS
Template Predicted Secondary structure 















...







Template SS confidence 















































































   23......30.........40.........50.........60.........70...... ...80.........90.........
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  LKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQ
Query Conservation    

   
  
          
   

 
                                
         
 
 

  
Alig confidence 


































..






























.










Template Conservation    
    

 
          
   

 
      ..       
   
                  
.  
   

  
Template Sequence  RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN. . FDEAKAKAIELSQQQGFTWVPPFDHPMVIAG. QGTLALELLQQ
Template Known Secondary structure  TT



SS

S



SS..



SS

.
Template Predicted Secondary structure 













..








.
Template SS confidence 















































































   100.........110.........120.........130.... .....140.........150.........160..... ....170......
 
   162.......170.........180.........190.........200...... ...210.........220..
Predicted Secondary structure 


















...................








Query SS confidence 












































. . . . . . . . . . . . . . . . . . .















Query Sequence  TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSI. . . . . . . . . . . . . . . . . . . PGIRRWPTEYLPGIFN
Query Conservation 
    
 

   
 

   
     
       




       ...................                
Alig confidence 


.








































...................















Template Conservation     . 
 

   



  


            

 
              
         
 
 

             
Template Sequence  DAH. LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLC
Template Known Secondary structure 
TT.


SSS
TT
TTT
TS



S


SSSSTT

SS


Template Predicted Secondary structure 


.



































Template SS confidence 















































































   177.. 180.........190.........200.........210.........220.........230.........240.........250.....
 
   223......230.........240.........250.........260.........270 .........280.........290.........300
Predicted Secondary structure 









..














Query SS confidence 















































. .





























Query Sequence  ASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN. . PDAVVVAIICDRGDRYLSTGVFGEEHFSQG
Query Conservation      
    
 
 
   
   
    

   



 
 
         ..    

 
  
 
 

  
           
Alig confidence 















































..










.







....





Template Conservation           
 
 
   
   
    

   



 
 


          
  

 
 

.
       ....    
 
Template Sequence  QEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSG. ANVNFHGL. . . . RYVSER
Template Known Secondary structure  TTS


T




T

S



.



TT....
Template Predicted Secondary structure 
















.



....
Template SS confidence 















































































   256...260.........270.........280.........290.........300.........310...... ...320.... .....330
 
   301..
Predicted Secondary structure 


Query SS confidence 


Query Sequence  AGI
Query Conservation     
Alig confidence 


Template Conservation     
Template Sequence  CEL
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 


   331..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions