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Job DescriptionP16703
Confidence100.00%DateThu Jan 5 11:35:48 GMT 2012
Rank32Aligned Residues283
% Identity19%Templatec3r0zA_
PDB info PDB header:lyaseChain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20... ......30...... ...40......... 50.........60
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Query Sequence  IGNTPLVKLQRMGPDN. . . . . . . . GSEVWLKLEGNNP. AGSVKDRAALSMI. . . . . VEAEKRGEIKP. . . . . . . . . . . . .
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Template Sequence  MIESDVVAIPAMQKRLEKEYGQTINGEMLLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFK
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SGGG
TTTSBTTS

TTS
GGGGGS
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   74.....80.........90.........100.........110.........120.........130.........140.........150...
 
   61........70.........80.........90.........100.........110.........120.........130......
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Query Sequence  . . . . GDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK
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Template Sequence  QFFSQYSIAVGSTGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDD. . YGVAVEQGRKAAQSDPNC
Template Known Secondary structure  TTS
SST
TTS
TT
SS
..TTT
TT
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   154.....160.........170.........180.........190.........200.........210... ......220.........230.
 
   137..140.........150.........160.. .......170.........180.........190.. .......200......
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Query Sequence  LLDQFNNPDNPYAHYTTTGPEIWQQT. . . . . . . . GGRITHFVSSMGTTGTITGVSRFMREQSKP. VTIVGLQPEEGSSI.
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Template Sequence  FF. . . . ISRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCML
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TT


SSSS

SSSGGGTT

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   232. ......240.........250.........260.........270.........280.........290.........300.......
 
   207..210.........220.........230.........240.........250.........260..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . PGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAG
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Template Sequence  LGVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGLYTLDDQTMYDMLGWLAQEEGIRLEPSALAGMAG
Template Known Secondary structure  S
GGG

STTTT




S
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GGG
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GGGGGGGG
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   312.......320.........330.........340.........350.........360.........370.........380.........390.
 
   263...... 270.........280.........290.........
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Query Sequence  ALRVAKA. . . . . . . . . . . . . NPDAVVVAIICDRGDRYLSTGVFGEEHFSQ
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Template Sequence  PQRICASVAYQQRHGFSQTQLGNATHLVWATGGGMVPEDEM. . . EQYLAK
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TT

T

B
TT

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   392.......400.........410.........420.........430.. ......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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