Job Description P16703 Confidence 38.21% Date Thu Jan 5 11:35:48 GMT 2012 Rank 159 Aligned Residues 227 % Identity 11% Template c3n0wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Resolution 1.88 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		S	E	V	W	L	K	L	E	G	N	N	P	A	G	S	V	K	D	R	A	A	L	S	M	I	V	E	A	E	K	R	G	E	I	K	P	G	D	V	L	I	E	A	T	S	G	N	T	G	I	A	L	A	M	I	A	A	L	K	G	Y	R	M	K	L	L	M	P	D	N	M	S	Q	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																		.	.										.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation																		.	.										.	.	.	.	.	.	.
Template Sequence		V	K	L	V	S	A	D	Y	Q	X	K	T	D	V	A	L	.	.	S	I	A	R	E	W	F	D	R	.	.	.	.	.	.	.	D	G	V	D	A	I	F	D	V	V	N	S	G	T	A	L	A	I	N	N	L	V	K	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G
Template Known Secondary structure										T	T							.	.										.	.	.	.	.	.	.	S																									T							S				T	T	T	T	T	T	T			S
Template Predicted Secondary structure																		.	.										.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
																98	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	R	A	A	M	R	A	Y	G	A	E	.	.	L	I	L	V	T	K	E	Q	G	M	E	G	A	R	D	L	A	L	E	M	A	N	R	G	E	G	K	L	L	D	Q	F	N	N	P	D	N	P	Y	A	H	Y	T	T	T	G	P	E	I	W	Q	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																																									.
Template Conservation																																																																						.
Template Sequence		Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	W	F	L	X	L	P	D	A	A	Y	G	D	L	X	N	A	A	I	R	R	E	L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	.	F	S	S	Y	L	L	Q	A	K	A	S
Template Known Secondary structure		S					S																	T	T										S	S																		T											T	T				.
Template Predicted Secondary structure																																																																						.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	R	I	T	H	F	V	S	S	M	G	T	T	G	T	I	T	G	V	S	R	F	M	R	E	Q	S	K	P	V	T	I	V	G	L	Q	P	E	E	G	S	S	I	P	G	I	R	R	W	P	T	E	Y	L	P	G	I	F	N	A	S	L	V	D	E	V	L	D	I	H	Q	R	D	A	E	N	T	M
Query Conservation
Alig confidence		.	.	.								.																																																									.	.	.	.
Template Conservation		.	.	.								.																																																									.	.	.	.
Template Sequence		.	.	.	G	A	Q	L	I	V	S	.	T	S	G	G	A	A	N	I	N	I	X	K	Q	A	R	E	F	G	L	P	S	K	T	Q	K	V	G	G	X	I	D	I	L	T	D	V	K	S	A	G	L	R	V	X	Q	G	Q	E	Y	A	T	S	F	Y	W	N	.	.	.	.	X	D	D	R	T	R	A	F	A
Template Known Secondary structure		.	.	.	T		S					.																	T	T		S		S	S							B															T	T						S			T	T	.	.	.	.	S	S
Template Predicted Secondary structure		.	.	.								.																																																									.	.	.	.
Template SS confidence
					217	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.					280	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	A	V	R	E	G	I	F	C	G	V	S	S	G	G	A	V	A	G	A	L	R	V	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	F	Y	A	K	X	G	K	X	P	T	N	N	Q	A	G	G	Y	S	A	A	L	Q	Y	L	K	A
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions