Job Description P16703 Confidence 100.00% Date Thu Jan 5 11:35:48 GMT 2012 Rank 23 Aligned Residues 285 % Identity 22% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.														.
Query SS confidence											.														.
Query Sequence		S	T	L	E	Q	T	I	G	N	.	T	P	L	V	K	L	Q	R	M	G	P	D	N	.	G	S	E	V	W	L	K	L	E	G	N	N	P	A	G	S	V	K	D	R	A	A	L	S	M	I	V	E	A	E	K	R	G	E	I	K	P	G	D	V	L	I	E	A	T	S	G	N	T	G	I	A	L	A	M	I
Query Conservation											.														.
Alig confidence											.														.																																				.	.	.
Template Conservation																																																													.	.	.
Template Sequence		H	Y	L	R	Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	H	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	K	R	.	.	.	R	V	I	A	E	T	G	A	G	Q	H	G	V	S	V	A	T	V
Template Known Secondary structure							T	T			S														T	S	S							G	G	G	S	G	G	G	B	T	T															T			.	.	.							S	S	S
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																									.																					.	.	.	.	.	.	.
Query SS confidence													.	.	.																									.																					.	.	.	.	.	.	.
Query Sequence		A	A	L	K	G	Y	R	M	K	L	L	.	.	.	M	P	D	N	M	S	Q	E	R	R	A	A	M	R	A	Y	G	A	E	L	I	L	V	T	.	K	E	Q	G	M	E	G	A	R	D	L	A	L	E	M	A	N	R	G	E	.	.	.	.	.	.	.	G	K	L	L	D	Q	F	N	N	P	D	N	P	Y
Query Conservation													.	.	.																									.																					.	.	.	.	.	.	.
Alig confidence													.	.	.																									.																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	F	G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P	X	X	V	R
Template Known Secondary structure						T														T											T	T								S	T	T	S	S															T	T	T	T								S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.																												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	H	Y	T	T	T	G	P	E	I	W	Q	Q	T	.	.	.	.	G	G	R	I	T	H	F	V	S	S	M	G	T	T	G	T	I	T	G	V	S	R	F	M	R	E	Q	.	S	K	P	V	T	I	V	G	L	Q	P	E	E	G	S	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.																												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R	G	V	L	H
Template Known Secondary structure					T															S	S			S							S	S	S	S											T	S		T	T												T	T	S	S	S										T						T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
							207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure		.	.	.	.	.																																																																	.
Query SS confidence		.	.	.	.	.																																																																	.
Query Sequence		.	.	.	.	.	P	G	I	R	R	W	P	T	E	Y	L	P	G	I	F	N	A	S	L	V	D	E	V	L	D	I	H	Q	R	D	A	E	N	T	M	R	E	L	A	V	R	E	G	I	F	C	G	V	S	S	G	G	A	V	A	G	A	L	R	V	A	K	A	N	.	P	D	A	V	V	V	A	I	I	C
Query Conservation		.	.	.	.	.																																																																	.
Alig confidence		.	.	.	.	.																																																																	.
Template Conservation
Template Sequence		G	S	Y	X	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	E	X	D	K	D	Q	V	V	V	I	N	L	S
Template Known Secondary structure		T					B					S	B												T	S																							S			B															T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		281	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	G	D	R	Y	L	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	G	D	K	D	V	T	E
Template Known Secondary structure		B	B	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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