Phyre 2 alignment of P76460 with d1otsa

Job Description P76460
Confidence 1.88% Date Thu Jan 5 12:23:05 GMT 2012

Rank 38 Aligned Residues 337

% Identity 10% Template d1otsa_

SCOP info Clc chloride channel Clc chloride channel Clc chloride channel

Resolution 2.51

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.									.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence	I	G	R	I	S	R	F	M	T	R	F	V	S	R	W	L	P	D	P	L	I	F	A	M	L	L	T	L	L	T	F	V	I	A	L	W	L	.	.	.	.	.	.	.	.	T	P	Q	T	P	I	S	M	V	K	M	W	G	D	G	.	.	.	.	.	F	W	N	L	L	A	F	G	M	Q	M	A	L	I	I
Query Conservation																																						.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence	L	Q	N	Q	R	M	G	A	L	V	H	T	A	D	N	Y	P	L	L	L	T	V	A	F	L	C	S	A	V	L	A	M	F	G	Y	F	L	V	R	K	Y	A	P	E	A	G	G	S	G	I	P	E	I	E	G	A	L	E	D	Q	R	P	V	R	W	W	R	V	L	P	V	K	F	F	G	G	L	G	T	L
Template Known Secondary structure												T	S	S	S																												G	G	G	S	S		S									T	T		S
Template Predicted Secondary structure
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence	V	T	G	H	A	L	A	S	S	A	P	V	K	S	L	L	R	T	A	A	S	A	A	K	T	P	V	Q	G	V	M	L	V	T	F	F	G	S	V	A	C	V	I	N	W	G	F	G	L	V	V	G	A	M	F	A	R	E	V	A	.	.	.	.	.	.	.	.	.	R	R	V	P	G	S	D	Y	P	L	L
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	G	G	M	V	L	G	R	E	G	P	T	V	Q	I	G	G	N	I	G	R	M	V	L	D	I	F	R	L	K	G	D	E	A	R	H	T	L	L	A	T	G	A	A	A	G	L	A	A	A	F	N	A	P	L	A	G	I	L	F	I	I	E	E	M	R	P	Q	F	R	Y	T	L	I	S	I	K	A	V	F
Template Known Secondary structure		T	T		S		B	S																			T	T			S																					T										T	T	T	T	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	C	A	Y	I	G	F	L	T	W	G	G	G	F	S	G	S	M	P	L	L	A	A	T	P	G	N	P	V	E	H	I	A	G	L	I	P	V	G	D	T	L	F	S	G	F	N	I	F	I	T	V	A	L	I	V	V	M	P	F	I	T	R	M	M	M	P	K	P	S	D	V	V	S	I	D	P	K	L
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence	I	G	V	I	M	S	T	I	M	Y	R	I	F	N	H	E	V	A	L	I	D	V	G	K	L	S	D	A	.	.	.	.	.	.	.	.	P	L	N	T	L	W	L	Y	L	I	L	G	I	I	F	G	I	F	G	P	I	F	N	K	W	V	L	G	M	Q	D	L	L	H	R	V	H	G	G	N	I	T	K	W
Template Known Secondary structure														S		S			S	S									.	.	.	.	.	.	.	.		G	G	G																																		T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

																			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	M	E	E	A	D	F	Q	K	Q	L	P	K	D	A	P	P	S	E	R	L	E	E	S	R	I	L	T	L	I	I	G	A	L	G	I	A	Y	L	A	M	Y	F	S	E	H	G	F	N	I	T	I	N	T	V	N	L	M	F	M	I	A
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	L	M	G	G	A	I	G	G	L	C	G	L	L	G	F	V	A	P	A	T	S	G	G	G	F	N	L	I	P	I	A	T	A	G	N	F	S	M	G	M	L	V	F	I	F	V	A	R	V	I	T	T	L	L	C	F	S	S	G	A	P	G	G	I	F	A	P	M	L	A	L	G	T	V	L	G	T	A	F
Template Known Secondary structure																			G	G	G	S	S		S	T	T								T		S																						T	T		S	S	B	S
Template Predicted Secondary structure
Template SS confidence
	292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	L	L	H	K	T	P	M	A	Y	M	R	A	I	S	A	A	A	R	S	T	A	G	I	L	V	Q	F	P	F	Y	A	G	I	Q	L	M	M	E	H	S	G	L	G	G	L	I	T	E	F	F	I	N	V	A	N	K	D	T	F	P	V	M	T	F	F	S	S	A	L	I	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence	G	.	.	.	.	.	.	.	.	M	V	A	V	E	L	F	P	Q	Y	H	L	E	A	G	T	F	A	I	A	G	M	G	A	L	L	A	A	S	I	R	A	P	L	T	G	I	I	L	V	L	E	M	T	D	N	Y	Q	L	I	L	P	M	I	I	T	G	L	G	A	T	L	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.								G	G	G	T												T						T	S																	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
	372									.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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