Phyre 2 alignment of P76460 with c3nd0A

Job Description P76460
Confidence 2.17% Date Thu Jan 5 12:23:05 GMT 2012

Rank 29 Aligned Residues 345

% Identity 9% Template c3nd0A_

PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter

Resolution 3.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.									.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence	I	G	R	I	S	R	F	M	T	R	F	V	S	R	W	L	P	D	P	L	I	F	A	M	L	L	T	L	L	T	F	V	I	A	L	W	L	.	.	.	.	.	.	.	.	T	P	Q	T	P	I	S	M	V	K	M	W	G	D	.	.	.	.	.	G	F	W	N	L	L	A	F	G	M	Q	M	A	L	I	I
Query Conservation																																						.	.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence	M	L	Q	W	R	S	Q	L	A	Q	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	P	D	T	S	G	S	G	I	P	Q	I	E	G	H	L	E	G	K	L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L
Template Known Secondary structure												S	T	T	S		T																						T	T	T		G	G	G	S	B		S								T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

	69	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence	V	T	G	.	.	.	.	.	.	H	A	L	A	S	S	A	P	V	K	S	L	L	R	T	A	A	S	A	A	K	T	P	V	Q	G	V	M	L	V	T	F	F	G	S	V	A	C	V	I	N	W	G	F	G	L	V	V	G	A	M	F	A	R	E	V	A	R	R	V	P	G	S	D	Y	P	L	L	I	A	C
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.									.	.
Template Conservation																		.	.
Template Sequence	G	A	G	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	.	.	S	I	G	Q	M	T	G	G	W	F	K	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G	L	A	T	A	F	N	A	P	L	A	G	V	A	L	I	G	E	E	M	H	P	R	F	R	S	Q	T	L	A	Y	H	S	L
Template Known Secondary structure		T	T		S			T										.	.										T	T																							T											S	S	S					S	S			T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
	136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.
Query Sequence	A	Y	I	G	F	L	T	W	G	G	G	F	S	G	S	M	P	L	L	A	A	T	P	G	N	P	V	E	H	I	A	G	L	I	P	V	G	D	T	L	F	S	G	F	N	I	F	I	T	V	A	L	I	V	V	M	P	F	I	T	R	M	M	M	P	K	P	S	D	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	F	G	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V	M	G	Y	T	F	N	R	G	L	F	K	V	L	D	W	F	D	R	L	P	P	L	A	T	K	W	K	G	F	L	L	G	S	I
Template Known Secondary structure															T		S	S		S	S			T	T						G	G	G																															T
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

							213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	V	S	I	D	P	K	L	L	M	E	E	A	D	F	Q	K	Q	L	P	K	D	A	P	P	S	E	R	L	E	E	S	R	I	L	T	L	I	I	G	A	L	G	I	A	Y	L	A	M	Y	F	S	E	H	G	F	N	I	T	I	N	T	V	N	L	M	F	M	I	A	G	L	L	L	H
Query Conservation	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence	I	G	I	L	S	L	F	P	L	P	L	T	D	G	G	D	N	A	V	L	W	A	F	N	S	Q	S	H	F	S	T	L	I	L	V	F	C	G	R	F	L	L	T	L	I	C	Y	G	S	G	A	I	G	G	I	F	A	P	M	L	G	I	A	S	I	V	S	V	A	M	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	S	S	S	S		S	S	S	S								T	T	S																								T	T		B			S																.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	T	P	M	A	Y	M	R	A	I	S	A	A	A	R	S	T	A	G	I	L	V	Q	F	P	F	Y	A	G	I	Q	L	M	M	E	H	S	G	L	G	G	L	I	T	E	F	F	I	N	V	A	N	K	D	T	F	P	V	M	T	F	F	S	S	A	L	I	N	F	A	V	P	S	G	G
Query Conservation
Alig confidence	.	.	.
Template Conservation	.	.	.
Template Sequence	.	.	.	A	R	H	F	H	L	L	F	P	S	Q	I	P	E	P	A	V	M	A	I	A	G	M	G	A	L	V	A	A	T	V	R	A	P	L	T	A	I	L	L	T	I	E	M	T	D	N	Y	F	V	I	L	P	L	L	V	T	C	L	V	A	S	V	V	A	E	A	L	G	G	K	P
Template Known Secondary structure	.	.	.									T	T	T		S	S	T							T	T	S								S												T	T				T	T																T	T	S
Template Predicted Secondary structure	.	.	.
Template SS confidence
				364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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