Job Description P04949 Confidence 100.00% Date Thu Jan 5 10:58:25 GMT 2012 Rank 1 Aligned Residues 494 % Identity 45% Template d1ucua_ SCOP info Phase 1 flagellin Phase 1 flagellin Phase 1 flagellin Resolution 4.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	I	N	T	N	S	L	S	L	I	T	Q	N	N	I	N	K	N	Q	S	A	L	S	S	S	I	E	R	L	S	S	G	L	R	I	N	S	A	K	D	D	A	A	G	Q	A	I	A	N	R	F	T	S	N	I	K	G	L	T	Q	A	A	R	N	A	N	D	G	I	S	V	A	Q	T	T	E	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	V	I	N	T	N	S	L	S	L	L	T	Q	N	N	L	N	K	S	Q	S	A	L	G	T	A	I	E	R	L	S	S	G	L	R	I	N	S	A	K	D	D	A	A	G	Q	A	I	A	N	R	F	T	A	N	I	K	G	L	T	Q	A	S	R	N	A	N	D	G	I	S	I	A	Q	T	T	E	G	A
Template Known Secondary structure			T																															T	S			T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	E	I	N	N	N	L	Q	R	V	R	E	L	T	V	Q	A	T	T	G	T	N	S	E	S	D	L	S	S	I	Q	D	E	I	K	S	R	L	D	E	I	D	R	V	S	G	Q	T	Q	F	N	G	V	N	V	L	A	K	N	G	S	M	K	I	Q	V	G	A	N	D	N	Q	T	I	T	I	D	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	E	I	N	N	N	L	Q	R	V	R	E	L	A	V	Q	S	A	N	S	T	N	S	Q	S	D	L	D	S	I	Q	A	E	I	T	Q	R	L	N	E	I	D	R	V	S	G	Q	T	Q	F	N	G	V	K	V	L	A	Q	D	N	T	L	T	I	Q	V	G	A	N	D	G	E	T	I	D	I	D	L	K
Template Known Secondary structure																				T		T	T																													B	T	T	B		T	T	T	S									S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	D	A	K	T	L	G	L	D	G	F	S	V	K	N	N	D	T	V	T	T	S	A	P	V	T	A	F	G	A	T	T	T	N	N	I	K	L	T	G	I	T	L	S	T	E	A	A	T	D	T	G	G	T	N	P	A	S	I	E	G	V	Y	T	D	N	G	N	D	Y	Y	A	K	I	T	G	G	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	N	S	Q	T	L	G	L	D	T	L	N	V	Q	Q	K	Y	K	V	S	D	T	A	A	T	V	T	G	Y	A	D	T	T	I	A	L	D	N	S	T	F	K	A	S	A	T	G	L	G	G	T	D	Q	K	I	D	G	D	L	K	F	D	D	T	T	G	K	Y	Y	A	K	V	T	V	T	G	G	T	G
Template Known Secondary structure				S	T	T	T	T	T		T	T																		S									B		T	T	S	T	T	T		G	G	G		S	S						S	S					T	T	T	T										T		S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	Y	Y	A	V	T	V	A	N	D	G	T	V	T	M	A	T	G	A	T	A	N	A	T	V	T	D	A	N	T	T	K	A	T	T	I	T	S	G	G	T	P	V	Q	I	D	N	T	A	G	S	A	T	A	N	L	G	A	V	S	L	V	K	L	Q	D	S	K	G	N	D	T	D	T	Y	A	L	K
Query Conservation
Alig confidence																																																																															.	.
Template Conservation																																																																															.	.
Template Sequence		K	D	G	Y	Y	E	V	S	V	D	K	T	N	G	E	V	T	L	A	G	G	A	T	S	P	L	T	G	G	L	P	A	T	A	T	E	D	V	K	N	V	Q	V	A	N	A	D	L	T	E	A	K	A	A	L	T	A	A	G	V	T	G	T	A	S	V	V	K	M	S	Y	T	D	N	N	G	K	.	.	T
Template Known Secondary structure												T	T	T		B				S	T	T		S	S			T	T	S	S		T	T						S						G	G	G	T										T	T			S												T	T	S		.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	N	G	N	L	Y	A	A	D	V	N	E	T	T	G	A	V	S	V	K	T	I	T	Y	T	D	S	S	G	A	A	S	S	P	T	A	V	K	L	G	G	D	D	G	K	T	E	V	V	D	I	D	G	K	T	Y	D	S	A	D	L	N	G	G	N	L	Q	T	G	L	T	A	G	G	E	A	L	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	G	G	L	A	V	K	V	G	D	D	Y	Y	S	A	T	Q	N	K	D	G	S	I	S	I	N	T	T	K	Y	T	A	D	D	G	T	S	K	T	A	L	N	K	L	G	G	A	D	G	K	T	E	V	V	S	I	G	G	K	T	Y	A	A	S	K	A	E	G	H	N	F	K	A	Q	P	D	L	A	E
Template Known Secondary structure											T	T									T	T	S						B						S	S	S	S					B					S	T	T	S								T	T									T	T		B	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	G	K	T	T	D	P	L	K	A	L	D	D	A	I	A	S	V	D	K	F	R	S	S	L	G	A	V	Q	N	R	L	D	S	A	V	T	N	L	N	N	T	T	T	N	L	S	E	A	Q	S	R	I	Q	D	A	D	Y	A	T	E	V	S	N	M	S	K	A	Q	I	I	Q	Q	A	G	N	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	A	T	T	T	E	N	P	L	Q	K	I	D	A	A	L	A	Q	V	D	T	L	R	S	D	L	G	A	V	Q	N	R	F	N	S	A	I	T	N	L	G	N	T	V	N	N	L	T	S	V	R	S	R	I	E	D	S	D	Y	A	T	E	V	S	N	M	S	R	A	Q	I	L	Q	Q	A	G	T	S	V
Template Known Secondary structure					S			S	S																																																S				S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	A	N	Q	V	P	Q	Q	V	L	S	L	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	Q	A	N	Q	V	P	Q	N	V	L	S	L	L	R
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.