Job Description P04949 Confidence 100.00% Date Thu Jan 5 10:58:25 GMT 2012 Rank 4 Aligned Residues 296 % Identity 36% Template c3k8wA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 Resolution 1.70 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	G	Q	A	I	A	N	R	F	T	S	N	I	K	G	L	T	Q	A	A	R	N	A	N	D	G	I	S	V	A	Q	T	T	E	G	A	L	S	E	I	N	N	N	L	Q	R	V	R	E	L	T	V	Q	A	T	T	G	T	N	S	E	S	D	L	S	S	I	Q	D	E	I	K	S	R	L	D	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	G	L	A	I	S	D	R	M	T	A	Q	I	K	G	L	T	Q	A	Q	R	N	A	N	D	G	I	S	L	A	Q	T	A	E	G	A	L	G	E	I	S	N	N	L	Q	R	I	R	E	L	A	V	Q	A	S	N	G	T	N	T	Q	T	D	R	D	A	L	Q	A	E	V	T	Q	L	Q	S	E	I
Template Known Secondary structure																																																										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	V	S	G	Q	T	Q	F	N	G	V	N	V	L	A	K	N	G	S	M	K	I	Q	V	G	A	N	D	N	Q	T	I	T	I	D	L	K	Q	I	D	A	K	T	L	G	L	D	G	F	S	V	K	N	N	D	T	V	T	T	S	A	P	V	T	A	F	G	A	T	T	T	N	N	I	K	L	T	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	V	A	E	Q	T	S	F	N	G	Q	K	L	L	D	G	S	F	N	G	V	Q	F	Q	I	G	A	N	A	G	E	T	I	G	V	S	K	I	M	N	A	Q	T	A	S	L	G	G	S	L	T	R	T	T	S	T	I	D	A	T	D	L	T	K	Y	D	T	A	M	A	A	G	D	L	T	I	N	G	V
Template Known Secondary structure											T	T				S	S	S										S	S	S	T	T												S	T	T	T	T	T												G	G	G		T	T	T	T	S		B		T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	T	E	A	A	T	D	T	G	G	T	N	P	A	S	I	E	G	V	Y	T	D	N	G	N	D	Y	Y	A	K	I	T	G	G	D	N	D	G	K	Y	Y	A	V	T	V	A	N	D	G	T	V	T	M	A	T	G	A	T	A	N	A	T	V	T	D	A	N	T	T	K	A	T	T	I	T	S	G	G
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	G	K	I	D	A	A	S	T	A	Q	E	R	A	A	Q	L	T	E	A	I	N	R	V	S	S	Q	T	N	V	G	A	S	Y	D	K	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						B				S	S															T					S							T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	V	Q	I	D	N	T	A	G	S	A	T	A	N	L	G	A	V	S	L	V	K	L	Q	D	S	K	G	N	D	T	D	T	Y	A	L	K	D	T	N	G	N	L	Y	A	A	D	V	N	E	T	T	G	A	V	S	V	K	T	I	T	Y	T	D	S	S	G	A	A	S	S	P	T	A	V	K	L	G	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	T	L	T	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																												244	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	G	K	T	E	V	V	D	I	D	G	K	T	Y	D	S	A	D	L	N	G	G	N	L	Q	T	G	L	T	A	G	G	E	A	L	T	A	V	A	N	G	K	T	T	D	P	L	K	A	L	D	D	A	I	A	S	V	D	K	F	R	S	S	L	G	A	V	Q	N	R	L	D	S	A	V	T	N	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	I	A	V	A	G	A	A	N	D	A	T	V	A	G	W	A	N	N	A	T	T	G	T	A	T	T	T	T	G	I	N	S	L	T	V	S	S	F	T	N	A	Q	Q	T	I	T	Q	I	D	N	A	L	K	D	I	N	T	A	R	A	D	L	G	A	V	Q	N	R	F	T	S	T	V	A	N	L	Q
Template Known Secondary structure		S	S						S	S								S	S							S							S	S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	T	T	N	L	S	E	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	M	T	E	N	L	S	S	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions