Job Description P04949 Confidence 99.97% Date Thu Jan 5 10:58:25 GMT 2012 Rank 6 Aligned Residues 211 % Identity 17% Template c2d4xA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 3; PDBTitle: crystal structure of a 26k fragment of hap3 (flgl) Resolution 1.90 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	T	S	N	I	K	G	L	T	Q	A	A	R	N	A	N	D	G	I	S	V	A	Q	T	T	E	G	A	L	S	E	I	N	N	N	L	Q	R	V	R	E	L	T	V	Q	A	T	T	G	T	N	S	E	S	D	L	S	S	I	Q	D	E	I	K	S	R	L	D	E	I	D	R	V	S	G	Q	T	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	S	Q	A	Q	A	Q	N	S	Q	Y	A	L	A	R	T	F	A	T	Q	K	V	S	L	E	E	S	V	L	S	Q	V	T	T	A	I	Q	T	A	Q	E	K	I	V	Y	A	G	N	G	T	L	S	D	D	D	R	A	S	L	A	T	D	L	Q	G	I	R	D	Q	L	M	N	L	A	N	S	T	D	G
Template Known Secondary structure																																																T	T		T	T																									T		B		T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	N	V	L	A	K	N	G	S	M	K	I	Q	V	G	A	N	D	N	Q	T	I	T	I	D	L	K	Q	I	D	A	K	T	L	G	L	D	G	F	S	V	K	N	N	D	T	V	T	T	S	A	P	V	T	A	F	G	A	T	T	T	N	N	I	K	L	T	G	I	T	L	S	T	E	A	A	T	D
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	R	Y	I	F	A	G	Y	K	T	E	A	A	P	F	D	Q	A	T	G	G	Y	H	G	G	E	K	S	V	T	Q	Q	V	D	S	A	R	T	M	V	I	G	H	T	G	A	Q	I	F	N	S	I	T	S	N	A	V	P	E	P	D	G	S	D	S	E	K	N	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S		B	T	T	S	T	T		T	T	S		S	B		T	T	T			B		S		S	S							S	S	S						S								S				T	T					T	T	S								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	G	T	N	P	A	S	I	E	G	V	Y	T	D	N	G	N	D	Y	Y	A	K	I	T	G	G	D	N	D	G	K	Y	Y	A	V	T	V	A	N	D	G	T	V	T	M	A	T	G	A	T	A	N	A	T	V	T	D	A	N	T	T	K	A	T	T	I	T	S	G	G	T	P	V	Q	I	D	N	T	A
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	A	T	A	N	L	G	A	V	S	L	V	K	L	Q	D	S	K	G	N	D	T	D	T	Y	A	L	K	D	T	N	G	N	L	Y	A	A	D	V	N	E	T	T	G	A	V	S	V	K	T	I	T	Y	T	D	S	S	G	A	A	S	S	P	T	A	V	K	L	G	G	D	D	G	K	T	E	V	V	D
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	G	K	T	Y	D	S	A	D	L	N	G	G	N	L	Q	T	G	L	T	A	G	G	E	A	L	T	A	V	A	N	G	K	T	T	D	P	L	K	A	L	D	D	A	I	A	S	V	D	K	F	R	S	S	L	G	A	V	Q	N	R	L	D	S	A	V
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	F	V	M	L	D	T	A	I	A	A	L	K	T	P	V	E	G	N	N	V	E	K	E	K	A	A	A	A	I	D	K	T	N	R	G	L	K	N	S	L	N	N	V	L	T	V	R	A	E	L	G	T	Q	L	S	E	L	S	T	L	D
Template Known Secondary structure		.	.	.	.	.	.												T	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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