Phyre 2 alignment of P31552 with c3qovD

Job Description P31552
Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012

Rank 31 Aligned Residues 340

% Identity 14% Template c3qovD_

PDB info PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence	P	P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	Q	C	.	.	.	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A	F	S	A	G	A	T	F	V
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence	P	F	G	L	V	A	G	D	X	K	R	D	G	V	R	I	H	S	S	N	P	T	V	I	V	H	S	Q	H	D	L	D	S	W	A	N	L	V	A	R	C	L	Y	X	V	G	I	R	K	T	D	V	F	Q	N	S	S	G	Y	G	X	F	T	G	G	L	G	F	Q	Y	G	A	E	R	L	G	C	L	T	V
Template Known Secondary structure	T	T	T	T			S																																						T	T			T	T	S						S			T	T															T
Template Predicted Secondary structure
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence	L	V	E	K	Y	S	A	R	A	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	.	.	.	H	R	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	F	G	V	R	L	L	T	S	Y	G	M
Query Conservation																																												.	.	.
Alig confidence																																												.	.	.
Template Conservation
Template Sequence	P	A	A	A	G	N	S	K	R	Q	I	K	F	I	S	D	F	K	T	T	A	L	H	A	I	P	S	Y	A	I	R	L	A	E	V	F	Q	E	E	G	I	D	P	R	E	T	T	L	K	T	L	V	I	G	A	E	P	H	T	D	E	Q	R	R	K	I	E	R	X	L	N	V	K	A	Y	N	S	F	G	X
Template Known Secondary structure				S														T																					T	T			T	T	S	S	S								S	S															T	S
Template Predicted Secondary structure
Template SS confidence
	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	E	T	I	V	G	I	I	G	D	R	P	G	D	K	R	R	W	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K	V	L	E	A	D	G	W	L	H
Query Conservation
Alig confidence																.	.	.	.	.																																																		.	.	.	.
Template Conservation																.	.	.	.	.																																																		.	.	.	.
Template Sequence	T	E	X	N	G	P	G	V	A	F	E	C	Q	E	Q	.	.	.	.	.	N	G	X	H	F	W	E	D	C	Y	L	V	E	I	I	D	P	E	T	G	E	P	V	P	E	G	E	I	G	E	L	V	L	T	T	L	D	R	E	X	X	P	L	I	R	Y	R	T	R	.	.	.	.	D	L	T	R	I	L	P
Template Known Secondary structure	G	G	G	T									T	T		.	.	.	.	.	S	S					T	T	T								T	T	T		S	B		S	T	T										S	S			S	S				S					.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.																																																		.	.	.	.
Template SS confidence
	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.					.	.	.	.	.	.	310

	402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence	T	G	D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R	C	N	M	I	K	R	G	G	E	N	V	S	C	V	E	L	E	N	I	I	A	A	H	P	K	I	Q	D	I	V	V	V	G	I	K	D	S	I	R	D	E	A	I	K	A	F	V	V	L	.	N	E	G	E	T	L	S	E	E	E	F
Query Conservation																																																																					.
Alig confidence																																																																					.
Template Conservation
Template Sequence	G	K	C	P	C	G	R	T	H	L	R	I	D	R	I	K	G	R	S	D	D	X	F	I	I	K	G	V	N	I	F	P	X	Q	V	E	K	I	L	V	Q	F	P	E	L	G	S	N	Y	L	I	T	L	E	T	N	Q	D	E	X	I	V	E	V	E	L	S	D	L	S	T	D	N	Y	I	E	L	E	K	I
Template Known Secondary structure	S			T	T				S										S	T	T					T	T													T	T		T	T																								S	S
Template Predicted Secondary structure
Template SS confidence
	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

	481	.	.	.	.	.	.	.	.	490	.	.		.	.	.	.	.	.	.	500	.			.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.
Predicted Secondary structure													.										.	.													.
Query SS confidence													.										.	.													.
Query Sequence	F	R	F	C	E	Q	N	M	A	K	F	K	.	V	P	S	Y	L	E	I	R	K	.	.	D	L	P	R	N	C	S	G	K	I	I	R	.	K	N	L	K
Query Conservation													.										.	.													.
Alig confidence													.										.	.						.							.
Template Conservation																														.
Template Sequence	R	R	D	I	I	R	Q	L	K	D	E	I	L	V	T	P	K	V	K	L	V	K	K	G	S	L	P	Q	S	.	E	G	K	A	V	R	V	K	D	L	R
Template Known Secondary structure													S	S									T	T		S				.	S	S	S								S
Template Predicted Secondary structure																														.
Template SS confidence
	393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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