Job Description P31552 Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012 Rank 8 Aligned Residues 507 % Identity 27% Template c3ni2A_ PDB info PDB header:ligase Chain: A: PDB Molecule:4-coumarate:coa ligase; PDBTitle: crystal structures and enzymatic mechanisms of a populus tomentosa 4-2 coumarate:coa ligase Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	I	I	G	G	Q	H	L	R	Q	M	W	D	D	L	A	D	V	Y	G	H	K	T	A	L	I	C	E	S	S	G	G	V	V	N	R	Y	S	Y	L	E	L	N	Q	E	I	N	R	T	A	N	L	F	Y	T	L	G	I	R	K	G	D	K	V	A	L	H	L	D	N	C	P	E	F	I	F	C	W	F
Query Conservation
Alig confidence																																		.	.	.
Template Conservation																																		.	.	.
Template Sequence		I	Y	I	P	K	N	L	P	L	H	S	Y	V	L	E	N	L	S	N	H	S	S	K	P	C	L	I	N	G	A	N	G	.	.	.	D	V	Y	T	Y	A	D	V	E	L	T	A	R	R	V	A	S	G	L	N	K	I	G	I	Q	Q	G	D	V	I	M	L	F	L	P	S	S	P	E	F	V	L	A	F	L
Template Known Secondary structure						S	S								T	T	T	G	G	G	S	T	T	S						T	T	T		.	.	.																						T	T			T	T									S	S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	K	I	G	A	I	M	V	P	I	N	A	R	L	L	C	E	E	S	A	W	I	L	Q	N	S	Q	A	C	L	L	V	T	S	A	Q	F	Y	P	M	Y	Q	Q	I	Q	Q	E	D	A	T	Q	L	R	H	I	C	L	T	D	V	A	L	P	A	D	D	G	V	S	S	F	T	Q	L	K	N	Q	Q
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.
Template Sequence		G	A	S	H	R	G	A	I	I	T	A	A	N	P	F	S	T	P	A	E	L	A	K	H	A	K	A	S	R	A	K	L	L	I	T	Q	A	C	Y	Y	E	K	V	K	D	F	A	R	E	S	D	V	K	V	M	C	V	D	S	A	P	D	G	C	L	H	F	.	.	.	.	.	.	.	S	E	L	T	Q	A
Template Known Secondary structure							T								T	T														T								G	G	G	T											T						S	S				T	T				T	.	.	.	.	.	.	.					T	S
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		P	A	T	L	C	Y	A	P	P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	.	.	.	.	Q	C	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A
Query Conservation																																																	.	.	.	.
Alig confidence																																																	.	.	.	.
Template Conservation
Template Sequence		D	E	N	E	A	P	Q	V	D	I	S	P	D	D	V	V	A	L	P	Y	S	S	G	T	T	G	L	P	K	G	V	M	L	T	H	K	G	L	I	T	S	V	A	Q	Q	V	D	G	D	N	P	N	L	Y	F	H	S	E	D	V	I	L	C	V	L	P	M	F	H	I	Y	A	L	N	S	I	M	L	C	G
Template Known Secondary structure			G	G	G								T	T	S									T	T	S	S	S																					S	S	S		S	S				T	T							S		T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		F	S	A	G	A	T	F	V	L	V	E	K	Y	S	A	R	A	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	H	R	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	F	.	.	G	V	R
Query Conservation																																																																													.	.
Alig confidence																																																																													.	.
Template Conservation
Template Sequence		L	R	V	G	A	P	I	L	I	M	P	K	F	E	I	G	S	L	L	G	L	I	E	K	Y	K	V	S	I	A	P	V	V	P	P	V	M	M	S	I	A	K	S	P	D	L	D	K	H	D	L	S	S	L	R	M	I	K	S	G	G	A	P	L	G	K	E	L	E	D	T	V	R	A	K	F	P	Q	A	R
Template Known Secondary structure					T							S	S														T																T		S		G	G	G	S			T	T								S	S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		L	L	T	S	Y	G	M	T	E	T	I	V	G	I	I	G	D	R	.	.	P	G	D	K	R	R	W	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		L	G	Q	G	Y	G	M	T	E	A	G	P	V	L	A	M	C	L	A	F	A	K	E	P	F	D	I	K	P	G	A	C	G	T	V	V	R	N	A	E	M	K	I	V	D	P	E	T	G	A	S	L	P	R	N	Q	P	G	E	I	C	I	R	G	D	Q	I	M	K	G	Y	L	N	D	P	E	A	T	S	R
Template Known Secondary structure									G	G	G	S	S						G	G	G	S	S	S						T	T							S	S								T	T	T			B			T	T									S	T	T	S		S			T	T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	A	D	G	W	L	H	T	G	D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R	C	N	M	I	K	R	G	G	E	N	V	S	C	V	E	L	E	N	I	I	A	A	H	P	K	I	Q	D	I	V	V	V	G	I	K	D	S	I	R	D	E	A	I	K	A	F	V	V	L	N	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	D	K	E	G	W	L	H	T	G	D	I	G	Y	I	D	D	D	D	E	L	F	I	V	D	R	L	K	E	L	I	K	Y	K	G	F	Q	V	A	P	A	E	L	E	A	L	L	I	A	H	P	E	I	S	D	A	A	V	V	G	L	K	D	E	D	A	G	E	V	P	V	A	F	V	V	K	S	E	K
Template Known Secondary structure			B		T	T	S												T	T	S									S						T	T														T	S	T	T												T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	L	S	E	E	E	F	F	R	F	C	E	Q	N	M	A	K	F	K	V	P	S	Y	L	E	I	R	K	D	L	P	R	N	C	S	G	K	I	I	R	K	N	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	A	T	E	D	E	I	K	Q	Y	I	S	K	Q	V	I	F	Y	K	R	I	K	R	V	F	F	I	E	A	I	P	K	A	P	S	G	K	I	L	R	K	N	L	K
Template Known Secondary structure															T	T	S		G	G	G			S						S				B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530