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Job DescriptionP31552
Confidence100.00%DateThu Jan 5 11:48:13 GMT 2012
Rank18Aligned Residues496
% Identity18%Templatec3kxwA_
PDB info PDB header:ligaseChain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  DIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFG
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Template Sequence  EYLQCQSLVDVVRLRALHSPNKKSCTFLN. KELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLG
Template Known Secondary structure  T
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TTS.TTTT

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   4.....10.........20.........30.. .......40.........50.........60.........70.........80..
 
   82.......90........ .100.........110.........120.........130.........140.........150........
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Query Sequence  LAKIGAIMVPINARLLC. . . EESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKN
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Template Sequence  CLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTANPKFLKIPAIA. . . . . . . . . . . . . . . . . LESIE
Template Known Secondary structure  TT




S

S




TT.................GGG

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   83......90.........100.........110.........120.........130.........140 .....
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  QQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFS
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Template Sequence  LNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIY
Template Known Secondary structure  GGGGGG






TTS
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TT

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TTSTTT
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   151........160.........170.........180.........190.........200.........210.........220.........230
 
   239240......... 250.........260.........270....... ..280.........290.........300.........310
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Query Sequence  AGATFVLVEKY. . . . SARAFWGQVQKYRATVTECIPMMIRTLM. . . . VQPPSANDQQHRLREVMFYLNLSEQEKDAFCER
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Template Sequence  GGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQA
Template Known Secondary structure  T



TT
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T

GGGGTT


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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   311 ........320.........330... ......340.........350.........360
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Query Sequence  F. . . . . . GVRLLTSYGMTETIVGIIGDRP. . . . . . . . . . . . . . . . . . . . . . . . GDKRRWPSIGRVGFCYEAEIRDDHNRP
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Template Sequence  FKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLI
Template Known Secondary structure  GGGT

GGG
GGGSS

TTS



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SSSB

B

TT
TT



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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   361........370.........380.........390.... .....400.........410.........420.........430......
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Query Sequence  LPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVL. . . . EADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVEL
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Template Sequence  PCD. . FDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDAIYLRTGDLGFLHENELYVTGRIKDLIIIYGKNHYPQDI
Template Known Secondary structure  B

..TTB
STTS


BTT

B

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TT
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   391.. ......400.........410.........420.........430.........440.........450.........460........
 
   437..440..... ....450.........460.........470....... ..480.........490.........500........
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Query Sequence  ENIIAAHPK. . . IQDIVVVGIKDSIRDEAIKAFVVLNEGETLSE. . . . . EEFFRFCEQNMAKFKVPSYLEIRKDLPRNCS
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Template Conservation 
  
   
 
  
    
                             
   
             
         
 
  
Template Sequence  EFSLXHSPLHHVLGKCAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAXPHTTS
Template Known Secondary structure  SGGGGGTTS
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   472.......480.........490.........500.........510.........520.........530.........540.........550.
 
   509510.......
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Query Sequence  GKIIRKNLK
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Template Sequence  GKIRRNFCR
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   552.......560
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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