Job Description P31552 Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012 Rank 27 Aligned Residues 393 % Identity 24% Template c3ivrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	Q	H	L	R	Q	M	W	D	D	L	A	D	V	Y	G	H	K	T	A	L	I	C	E	S	S	G	G	V	V	N	R	Y	S	Y	L	E	L	N	Q	E	I	N	R	T	A	N	L	F	Y	T	L	G	I	R	K	G	D	K	V	A	L	H	L	D	N	C	P	E	F	I	F	C	W	F	G	L	A
Query Conservation
Alig confidence																													.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		L	H	D	F	T	L	A	D	V	Y	R	R	N	A	A	L	F	P	D	R	T	A	F	M	V	D	G	.	.	.	.	.	V	R	L	T	H	R	D	Y	L	A	R	A	E	R	L	A	S	G	L	L	R	D	G	V	H	T	G	D	R	V	A	I	L	S	Q	N	C	S	E	M	I	E	L	I	G	A	V	A
Template Known Secondary structure		T	T															S	T	T	S						T	T	.	.	.	.	.																						T	T			T	T									S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	A	I	M	V	P	I	N	A	R	L	L	C	E	E	S	A	W	I	L	Q	N	S	Q	A	C	L	L	V	T	S	A	Q	F	Y	P	M	Y	Q	Q	I	Q	Q	E	D	A	T	Q	L	R	H	I	C	L	T	D	V	A	L	P	A	D	D	G	V	S	S	F	T	Q	L	K	N	Q	Q	P	A	T
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.
Template Sequence		L	I	G	A	I	L	L	P	V	N	Y	R	L	N	A	D	E	I	A	F	V	L	G	D	G	A	P	S	V	V	V	A	G	T	D	Y	R	D	I	V	A	G	V	L	P	S	L	G	G	V	K	K	A	Y	A	I	G	D	G	S	G	P	F	A	.	.	.	.	.	.	.	.	.	P	F	K	D	L	A	S
Template Known Secondary structure			T	T								T	T	S																					S	T	T								G	G	G		S	S							S	S				S	S			.	.	.	.	.	.	.	.	.		G	G	G	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	Y	A	P	P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	Q	C	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A	F	S	A	G	A	T	F
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		D	T	P	F	S	A	P	E	F	G	A	A	D	G	F	V	I	I	H	T	A	A	G	R	P	R	G	A	L	I	S	Q	G	N	L	L	I	A	Q	S	S	L	V	D	A	W	R	L	T	E	A	D	V	N	L	G	M	L	P	L	F	H	V	T	G	.	L	G	L	M	L	T	L	Q	Q	A	G	G	A	S
Template Known Secondary structure			S									T	T	S																																	T	T			T	T							S		T	T	S				.											T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	V	E	K	Y	S	A	R	A	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	H	R	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	F	G	V	R	L	L	T	S	Y	G	M	T	E
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		V	I	A	A	K	F	D	P	A	Q	A	A	R	D	I	E	A	H	K	V	T	V	M	A	E	F	A	P	M	L	G	N	I	L	D	Q	A	A	P	A	Q	L	A	S	L	.	.	.	R	A	V	T	G	L	D	T	P	E	T	I	E	R	F	E	A	T	C	P	N	A	T	F	W	A	T	F	G	Q	S	E
Template Known Secondary structure					S	S														T								T	T											G	G	G	G	T	T		.	.	.																				T	T										G	G
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	V	G	I	I	G	D	R	P	G	D	K	R	R	W	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K	V	L	E	A	D	G	W	L	H	T	G
Query Conservation
Alig confidence										.	.																																										.	.	.																			.
Template Conservation										.	.																																										.	.	.																			.
Template Sequence		T	S	G	L	S	T	F	A	.	.	P	Y	R	D	R	P	K	S	A	G	R	P	L	F	W	R	T	V	A	V	V	D	A	E	D	R	P	L	P	P	G	E	V	G	E	I	V	L	R	G	P	.	.	.	T	V	F	K	G	Y	W	N	N	A	A	A	T	Q	H	A	F	R	.	N	G	W	H	H	T	G
Template Known Secondary structure		G	T							.	.		G	G	G	S	T	T	S						T	T								T	T	S		B			T	T									S	T	.	.	.	T	S					T	T									T	G	.	G	G	S
Template Predicted Secondary structure										.	.																																										.	.	.																			.
Template SS confidence
		308	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	M	G	R	F	D	A	D	G	Y	L	F	Y	A	G	R	A
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions