Job Description P31552 Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012 Rank 6 Aligned Residues 496 % Identity 24% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	R	Q	M	W	D	D	L	A	D	V	Y	G	H	K	T	A	L	I	C	E	S	S	G	G	V	V	N	R	Y	S	Y	L	E	L	N	Q	E	I	N	R	T	A	N	L	F	Y	T	L	G	I	R	K	G	D	K	V	A	L	H	L	D	N	C	P	E	F	I	F	C	W	F	G	L	A	K	I	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	Y	D	V	V	D	V	Y	A	R	D	S	P	E	K	L	A	M	I	W	C	D	D	Y	G	N	E	K	I	F	T	F	K	D	L	K	Y	Y	S	D	K	A	A	N	F	F	V	K	H	G	I	G	K	G	D	Y	V	M	L	T	L	K	S	R	Y	D	F	W	Y	C	M	L	G	L	H	K	L	G	A
Template Known Secondary structure						T								S	T	T	S								S	S	S																								T	T			T	T								T	T		T													T
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		I	M	V	P	I	N	A	R	L	L	C	E	E	S	A	W	I	L	Q	N	S	Q	A	C	L	L	V	T	S	A	Q	.	.	.	F	Y	P	M	Y	Q	Q	I	Q	Q	E	D	A	T	Q	L	R	H	I	C	L	T	D	V	A	L	P	A	D	D	G	V	S	S	F	T	Q	L	K	N	Q	Q	P	A	T	L
Query Conservation																																	.	.	.
Alig confidence																																	.	.	.
Template Conservation
Template Sequence		I	A	V	P	A	T	H	M	L	K	T	R	D	I	V	Y	R	I	E	K	A	G	L	K	M	I	V	C	I	A	E	D	D	V	P	E	Q	V	D	E	A	H	A	E	C	G	D	I	P	L	K	K	A	K	V	G	G	D	V	L	E	G	W	I	D	F	R	K	E	L	E	E	S	S	P	I	F	E	R	P
Template Known Secondary structure								T	T														T		S						S	S	T	T														S									S	S	S			T	T											S		S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	A	P	P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	Q	C	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A	F	S	A	G	A	T	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W	G	K	C	V	W	G	K	L	Y	G	Q	W	I	A	G	C	A	V	F
Template Known Secondary structure			G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S				T	T									T	T	S	T						T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		245	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	V	E	K	.	.	Y	S	A	R	A	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	H	R	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	F	G	V	R	L	L	T	S	Y	G	M	T
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	E	D	L	S	H	Y	N	F	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V	F	N	R	F	L	E	F	T	G	I	K	L	M	E	G	F	G	Q	T
Template Known Secondary structure						S	S														T																	S		T	T	T	T	T			S								S	S															S										T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		E	T	I	V	G	I	I	G	D	R	P	G	D	K	R	R	W	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	.	.	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K	V	L	E	A	D	G	W	L
Query Conservation																																																					.	.
Alig confidence														.																																							.	.																					.
Template Conservation														.																																																													.
Template Sequence		E	T	V	V	T	I	A	T	F	P	W	M	.	E	P	K	P	G	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F	V	H	Y	G	K	D	P	E	R	T	E	E	T	.	W	H	D	G	Y	Y
Template Known Secondary structure		T	S	S							T	T	S	.				T	T			B				T	T								T	T	S		B			T	T										T	T				T	T						T	T									.			T	T
Template Predicted Secondary structure														.																																																													.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		H	T	G	D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R	C	N	M	I	K	R	G	G	E	N	V	S	C	V	E	L	E	N	I	I	A	A	H	P	K	I	Q	D	I	V	V	V	G	I	K	D	S	I	R	D	E	A	I	K	A	F	V	V	L	N	E	G	E	T	L	S	E	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		H	T	G	D	M	A	W	M	D	E	D	G	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G	V	P	D	P	V	R	G	Q	V	I	K	A	T	I	V	L	T	K	D	Y	T	P	S	D	S	L	K
Template Known Secondary structure											T	T	S								S	S	S					T	T													T	T	S	T	T												T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	F	F	R	F	C	E	Q	N	M	A	K	F	K	V	P	S	Y	L	E	I	R	K	D	L	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	L	Q	D	H	V	K	N	V	T	A	P	Y	K	Y	P	R	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure												S		G	G	G			S						S
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.