Job Description P31552 Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012 Rank 9 Aligned Residues 482 % Identity 21% Template c3e7wA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains Resolution 2.28 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		H	L	R	Q	M	W	D	D	L	A	D	V	Y	G	H	K	T	A	L	I	C	E	S	S	G	G	V	V	N	R	Y	S	Y	L	E	L	N	Q	E	I	N	R	T	A	N	L	F	Y	T	.	L	G	I	R	K	G	D	K	V	A	L	H	L	D	N	C	P	E	F	I	F	C	W	F	G	L	A	K	I	G
Query Conservation																																																			.
Alig confidence																									.	.	.	.	.																						.
Template Conservation																									.	.	.	.	.
Template Sequence		K	L	L	H	A	I	Q	T	H	A	E	T	Y	P	Q	T	D	A	F	R	S	Q	G	.	.	.	.	.	Q	S	L	T	Y	Q	E	L	W	E	Q	S	D	R	A	A	A	A	I	Q	K	R	I	S	G	E	K	K	S	P	I	L	V	Y	G	H	M	E	P	H	M	I	V	S	F	L	G	S	V	K	A	G
Template Known Secondary structure														S	T	T	S						T	T	.	.	.	.	.																				T	T	T	S		S	S	S									S	S															T
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	M	V	P	I	N	A	R	L	L	C	E	E	S	A	W	I	L	Q	N	S	Q	A	C	L	L	V	T	S	A	Q	F	Y	P	M	Y	Q	Q	I	Q	Q	E	D	A	T	Q	L	R	H	I	C	L	T	D	V	A	L	P	A	D	D	G	V	S	S	F	T	Q	L	K	N	Q	Q	P	A	T	L	C	Y
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	P	Y	I	P	V	D	L	S	I	P	S	E	R	I	A	K	I	I	E	S	S	G	A	E	L	L	I	H	A	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	I	D	A	V	G	Q	Q	I	Q	T	V	S	A	E	E	L	L	E	N	E	G	G	S	V	S	Q
Template Known Secondary structure									T	T	S													T							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T					S	S										T	S		S					G
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	Q	C	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A	F	S	A	G	A	T	F	V	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	W	V	K	E	H	E	T	F	Y	I	I	Y	T	S	G	S	T	G	N	P	K	G	V	Q	I	S	A	A	N	L	Q	S	F	T	D	W	I	C	A	D	F	P	V	S	G	G	K	I	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	L	Y	P	C	L	Q	S	G	G	T	L	H	C	V	T
Template Known Secondary structure		G	G	S			T	T	S										T	T	S	S																						S	T	T	T	T	T							S		T	T	S	T												T	T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
				247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.																																												.																							.
Query SS confidence		.	.																																												.																							.
Query Sequence		.	.	E	K	Y	S	A	R	A	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	H	R	.	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	F	.	G	V	R	L	L	T	S	Y	G	M	T
Query Conservation		.	.																																												.																							.
Alig confidence		.	.																																												.																							.
Template Conservation
Template Sequence		K	D	A	V	N	K	P	K	V	L	F	E	E	L	K	K	S	G	L	N	V	W	T	S	T	P	S	F	V	Q	M	C	L	M	D	P	G	F	S	Q	D	L	L	P	H	A	D	T	F	M	F	C	G	E	V	L	P	V	S	V	A	K	A	L	L	E	R	F	P	K	A	K	I	F	N	T	Y	G	P	T
Template Known Secondary structure							S														S														T	S	T	T		S	T	T	T		T	T								S	S															T	T										G
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.			.
Predicted Secondary structure																			.	.	.	.																																																									.	.
Query SS confidence																			.	.	.	.																																																									.	.
Query Sequence		E	T	I	V	G	I	I	G	D	R	P	G	D	K	R	R	W	.	.	.	.	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K	V	L	E	.	.	A
Query Conservation																			.	.	.	.																																																									.	.
Alig confidence																			.	.	.	.																																				.	.	.																			.	.
Template Conservation																																																										.	.	.
Template Sequence		E	A	T	V	A	V	T	S	V	E	I	T	N	D	V	I	S	R	S	E	S	L	P	V	G	F	A	K	P	D	M	N	I	F	I	M	D	E	E	G	Q	P	L	P	E	G	E	K	G	E	I	V	I	A	G	P	.	.	.	S	V	S	R	G	Y	L	G	E	P	E	L	T	E	K	A	F	F	S	H	E
Template Known Secondary structure		G	G	S	S		S											T	T		S	S				B				T	T								T	T	S		B			T	T									S	T	.	.	.	T	S				B	T	T												S	S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	W	L	H	T	G	D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R	C	N	M	I	K	R	G	G	E	N	V	S	C	V	E	L	E	N	I	I	A	A	H	P	K	I	Q	D	I	V	V	V	G	I	K	D	S	I	R	D	E	A	I	K	A	F	V	V	L	N	E	G	E	T	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	W	A	Y	R	T	G	D	A	G	F	I	Q	D	G	Q	I	F	C	Q	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	F	H	V	R	Q	S	Q	Y	V	R	S	A	V	V	I	P	Y	Q	P	N	G	T	V	E	Y	L	I	A	A	I	V	P	E	E	H	E	F	E	K
Template Known Secondary structure		S	S													T	T								S	S	S					T	T															S	T	T											S	S	S	S																S	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
						477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	E	E	E	F	F	R	F	C	E	Q	N	M	A	K	F	K	V	P	S	Y	L	E	I	R	K	D	L	P	R	N	C	S	G	K	I	I	R	K	N	L	K
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		E	F	Q	L	T	S	A	I	K	K	E	L	A	A	S	L	P	A	Y	M	I	P	R	K	F	I	Y	Q	D	H	I	Q	M	T	A	N	G	K	I	D	R	K	R	I	G
Template Known Secondary structure																	S		G	G	G	S		S						S				B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.