Job Description P31552 Confidence 100.00% Date Thu Jan 5 11:48:13 GMT 2012 Rank 20 Aligned Residues 478 % Identity 20% Template c3dhvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	M	W	D	D	L	A	D	V	Y	G	H	K	T	A	L	I	C	E	S	S	G	G	V	V	N	R	Y	S	Y	L	E	L	N	Q	E	I	N	R	T	A	N	L	F	Y	T	L	G	I	R	K	G	D	K	V	A	L	H	L	D	N	C	P	E	F	I	F	C	W	F	G	L	A	K	I	G	A	I
Query Conservation
Alig confidence																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		L	L	E	Q	I	E	K	W	A	A	E	T	P	D	Q	T	A	F	V	W	R	D	.	.	.	.	.	A	K	I	T	Y	K	Q	L	K	E	D	S	D	A	L	A	H	W	I	S	S	E	Y	P	D	D	R	S	P	I	M	V	Y	G	H	M	Q	P	E	M	I	I	N	F	L	G	C	V	K	A	G	H	A
Template Known Secondary structure													S	T	T	S						T	T	.	.	.	.	.																							S	T	T										S	S														T	T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	P	I	N	A	R	L	L	C	E	E	S	A	W	I	L	Q	N	S	Q	A	C	L	L	V	T	S	A	Q	F	Y	P	M	Y	Q	Q	I	Q	Q	E	D	A	T	Q	L	R	H	I	C	L	T	D	V	A	L	P	A	D	D	G	V	S	S	F	T	Q	L	K	N	Q	Q	P	A	T	L	C	Y	A	P
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	P	V	D	L	S	I	P	A	D	R	V	Q	R	I	A	E	N	S	G	A	K	L	L	L	S	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	T	D	L	P	V	R	I	V	S	E	D	N	L	K	D	I	F	F	T	H	K	G	N	T	P	N	P	E	H
Template Known Secondary structure							T	T	S													T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S			S	S					T										T	T	T					G	G	G
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	T	D	D	T	A	E	I	L	F	T	S	G	T	T	S	R	P	K	G	V	V	I	T	H	Y	N	L	R	F	A	G	Y	Y	S	A	W	Q	C	A	L	R	D	D	D	V	Y	L	T	V	M	P	A	F	H	I	D	C	Q	C	T	A	A	M	A	A	F	S	A	G	A	T	F	V	L	V	E	K
Query Conservation
Alig confidence																.	.	.	.	.
Template Conservation																.	.	.	.	.
Template Sequence		A	V	K	G	D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G	V	Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V	T	G	G	T	L	W	A	I	D	K	D
Template Known Secondary structure		S			T	T	S									.	.	.	.	.																						T	T			S	S							S		T	T	S	G	G	G										T	T
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		249	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure							.	.																																																										.	.
Query SS confidence							.	.																																																										.	.
Query Sequence		Y	S	A	R	A	.	.	F	W	G	Q	V	Q	K	Y	R	A	T	V	T	E	C	I	P	M	M	I	R	T	L	M	V	Q	P	P	S	A	N	D	Q	Q	H	R	L	R	E	V	M	F	Y	L	N	L	S	E	Q	E	K	D	A	F	C	E	R	.	.	F	G	V	R	L	L	T	S	Y	G	M	T	E	T
Query Conservation							.	.																																																										.	.
Alig confidence							.	.																																																										.	.
Template Conservation
Template Sequence		M	I	A	R	P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S	T	P	S	F	A	E	M	C	L	M	E	A	S	F	S	E	S	M	L	P	N	M	K	T	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P	K	A	T	I	M	N	T	Y	G	P	T	E	A
Template Known Secondary structure					S												T																T	S	T	T		S	T	T	T	S	T	T								S	S															T	T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.					.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.
Predicted Secondary structure													.	.	.	.																																																															.	.
Query SS confidence													.	.	.	.																																																															.	.
Query Sequence		I	V	G	I	I	G	D	R	P	G	D	.	.	.	.	K	R	R	W	P	S	I	G	R	V	G	F	C	Y	E	A	E	I	R	D	D	H	N	R	P	L	P	A	G	E	I	G	E	I	C	I	K	G	I	P	G	K	T	I	F	K	E	Y	F	L	N	P	Q	A	T	A	K	V	L	E	A	D	.	.	G
Query Conservation													.	.	.	.																																																															.	.
Alig confidence													.	.	.	.																																								.	.	.																					.	.
Template Conservation																																																								.	.	.
Template Sequence		T	V	A	V	T	G	I	H	V	T	E	E	V	L	D	Q	Y	K	S	L	P	V	G	Y	C	K	S	D	C	R	L	L	I	M	K	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	.	.	.	S	V	S	V	G	Y	L	G	S	P	E	L	T	E	K	A	F	T	M	I	D	G	E
Template Known Secondary structure		S	S		S														S	S								T	T								S	S	S	S	B			T	T									S	T	.	.	.	T	S		S		B	T	T													T	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		W	L	H	T	G	D	T	G	Y	R	D	E	E	D	F	F	Y	F	V	D	R	R	C	N	M	I	K	R	G	G	E	N	V	S	C	V	E	L	E	N	I	I	A	A	H	P	K	I	Q	D	I	V	V	V	G	I	K	D	S	I	R	D	E	A	I	K	A	F	V	V	L	N	E	G	E	T	L	S	E	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		R	A	Y	K	T	G	D	A	G	Y	V	E	N	G	L	L	F	Y	N	G	R	L	D	F	Q	I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	D	Y	L	L	A	V	V	V	P	G	E	H	S	F	E	K	E	F
Template Known Secondary structure														T	T								G	G	G					S	S															S	T	T											S	S	S	S												S				S	S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
					478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	E	F	F	R	F	C	E	Q	N	M	A	K	F	K	V	P	S	Y	L	E	I	R	K	D	L	P	R	N	C	S	G	K	I	I	R	K	N	L	K
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		K	L	T	S	A	I	K	K	E	L	N	E	R	L	P	N	Y	M	I	P	R	K	F	M	Y	Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	K	L	L
Template Known Secondary structure													T	T	S		G	G	G	S		S						S				B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.