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Job DescriptionP31552
Confidence100.00%DateThu Jan 5 11:48:13 GMT 2012
Rank13Aligned Residues480
% Identity18%Templatec1amuB_
PDB info PDB header:peptide synthetaseChain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWF
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Template Sequence  AEYPRDKTIHQLFEEQVSKRPNNVAIVCEN. . . . . EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL
Template Known Secondary structure 



TT


TTSTT.....T

TT


SS
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   33......40.........50.........60.. .......70.........80.........90.........100.......
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  GLAKIGAIMVPINARLLCEESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQ
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Template Conservation 
    
   
 
        
   
       

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Template Sequence  AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI. . . . . . . . . . . . . . . . . . . . . . . . HNQFNGQVEIFEE
Template Known Secondary structure  TT


TTS


S
GGGGGGG........................




S


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   108.110.........120.........130.........140.........150 .........160...
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  PATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG
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Template Conservation                              
 
                                                 
Template Sequence  DTIKIREGTNLHVPSKSTDLAYVIYTNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGA
Template Known Secondary structure  SSGGGS

S






TTS



TS


TT

S
TTSTTTT
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  ATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDQQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYG
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Template Sequence  SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP. . . ERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPT
Template Known Secondary structure 

T
TT


TTS
T...TT

S
SSS


TTTS

G
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   250.........260.........270.........280......... 290.........300.........310.........320......
 
   321........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  MTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEAD. . .
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Template Sequence  ETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGE. . . GLARGYWKRPELTSQKFVDNPFV
Template Known Secondary structure  GGSS
S

SS


SS


B
TT
TTS
B

TT

T...T


TT

SSS
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   327..330.........340.........350.........360.........370.........380 .........390.........400...
 
   398.400.........410.........420.........430.........440.........450.........460.........470....
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Query Sequence  . . . GWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGET
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Template Sequence  PGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSE. . KH
Template Known Secondary structure  TTS
TTS
GGGTTTSTT
TTS
S..S
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   404.....410.........420.........430.........440.........450.........460.........470......... 480.
 
   475....480.........490.........500.........510.......
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Query Sequence  LSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
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Template Conservation       
   
   
     
  
  
  

 
  


 
  
 
Template Sequence  IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP
Template Known Secondary structure 

S
GGGS
S
SS

B
TTSSB
GGGS
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   482.......490.........500.........510.........520....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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