Phyre 2 alignment of P37330 with d1n8ia

Job Description P37330
Confidence 100.00% Date Thu Jan 5 11:55:16 GMT 2012

Rank 2 Aligned Residues 694

% Identity 60% Template d1n8ia_

SCOP info TIM beta/alpha-barrel Malate synthase G Malate synthase G

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Q	T	I	T	Q	S	R	L	R	I	D	A	N	F	K	R	F	V	D	E	E	V	L	P	G	T	G	L	D	A	A	A	F	W	R	N	F	D	E	I	V	H	D	L	A	P	E	N	R	Q	L	L	A	E	R	D	R	I	Q	A	A	L	D	E	W	H	R	S	N	P	G	P	V	K	D	K	A	A	Y
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.
Template Sequence	T	D	R	V	S	V	G	N	L	R	I	A	R	V	L	Y	D	F	V	N	N	E	A	L	P	G	T	D	I	D	P	D	S	F	W	A	G	V	D	K	V	V	A	D	L	T	P	Q	N	Q	A	L	L	N	A	R	D	E	L	Q	A	Q	I	D	K	W	H	R	.	.	.	.	.	.	R	D	M	D	A	Y
Template Known Secondary structure							T	T														T	T	S	T	T	S																																										.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence	K	S	F	L	R	E	L	G	Y	L	V	P	Q	P	E	R	V	T	V	E	T	T	G	I	D	S	E	I	T	S	Q	A	G	P	Q	L	V	V	P	A	M	N	A	R	Y	A	L	N	A	A	N	A	R	W	G	S	L	Y	D	A	L	Y	G	S	D	I	I	P	Q	E	G	A	M	V	.	.	S	G	Y	D
Query Conservation																																																																											.	.
Alig confidence																																																																											.	.
Template Conservation
Template Sequence	R	Q	F	L	T	E	I	G	Y	L	L	P	E	P	D	D	F	T	I	T	T	S	G	V	D	A	E	I	T	T	T	A	G	P	Q	L	V	V	P	V	L	N	A	R	F	A	L	N	A	A	N	A	R	W	G	S	L	Y	D	A	L	Y	G	T	D	V	I	P	E	T	D	G	A	E	K	G	P	T	Y	N
Template Known Secondary structure							T	T	S	S													S							T										T	T										G	G	G										S	S	T	T	S				T	T					S	S
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	Q	R	G	E	Q	V	I	A	W	V	R	R	F	L	D	E	S	L	P	L	E	N	G	S	Y	Q	D	V	V	A	F	K	V	V	D	K	Q	L	R	I	Q	L	K	N	G	K	E	T	T	L	R	T	P	A	Q	F	V	G	Y	R	G	D	A	A	A	P	T	C	I	L	L	K	N	N	G	L	H	I	E
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence	K	V	R	G	D	K	V	I	A	Y	A	R	K	F	L	D	D	S	V	P	L	S	S	G	S	F	G	D	A	T	G	F	T	V	Q	D	G	Q	L	V	V	A	L	P	D	K	S	.	T	G	L	A	N	P	G	Q	F	A	G	Y	T	G	A	A	E	S	P	T	S	V	L	L	I	N	H	G	L	H	I	E
Template Known Secondary structure																			S		B	S	S	S		G	G	G								T	T							S	S			.			B	S	S	G	G	G								T	T										T	T
Template Predicted Secondary structure																																																.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Q	I	D	A	N	G	R	I	G	K	D	D	P	A	H	I	N	D	V	I	V	E	A	A	I	S	T	I	L	D	C	E	D	S	V	A	A	V	D	A	E	D	K	I	L	L	Y	R	N	L	L	G	L	M	Q	G	T	L	Q	E	K	M	E	K	N	G	R	Q	I	V	R	K	L	N	D	D	R	H	Y
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.
Template Sequence	I	L	I	D	P	E	S	Q	V	G	T	T	D	R	A	G	V	K	D	V	I	L	E	S	A	I	T	T	I	M	D	F	E	D	S	V	A	A	V	D	A	A	D	K	V	L	G	Y	R	N	W	L	G	L	N	K	G	D	L	.	.	.	.	.	.	.	.	.	.	A	A	R	V	L	N	R	D	R	N	Y
Template Known Secondary structure					T	T	S	T	T	G	G	G	S	T	T											S						S	S	T	T					S																	T			.	.	.	.	.	.	.	.	.	.	B			B
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
	241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.											300	.	.	.	.	.	.	.	.	.	310

	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence	T	A	A	D	G	S	E	I	S	L	H	G	R	S	L	L	F	I	R	N	V	G	H	L	M	T	I	P	V	I	W	D	S	E	G	N	E	I	P	E	G	I	L	D	G	V	M	T	G	A	I	A	L	Y	D	L	K	.	V	Q	K	N	S	R	T	G	S	V	Y	I	V	K	P	K	M	H	G	P	Q	E
Query Conservation																																																										.
Alig confidence																																																										.
Template Conservation
Template Sequence	T	A	P	G	G	G	Q	F	T	L	P	G	R	S	L	M	F	V	R	N	V	G	H	L	M	T	N	D	A	I	V	D	T	D	G	S	E	V	F	E	G	I	M	D	A	L	F	T	G	L	I	A	I	H	G	L	K	A	S	D	I	N	S	R	T	G	S	I	Y	I	V	K	P	K	M	H	G	P	A	E
Template Known Secondary structure			T	T	S							S	S										S	S									T	T																			G	G	G	G	S							S	S	S								S			S
Template Predicted Secondary structure
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	A	F	A	N	K	L	F	T	R	I	E	T	M	L	G	M	A	P	N	T	L	K	M	G	I	M	D	E	E	R	R	T	S	L	N	L	R	S	C	I	A	Q	A	R	N	R	V	A	F	I	N	T	G	F	L	D	R	T	G	D	E	M	H	S	V	M	E	A	G	P	M	L	R	K	N	Q	M	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	A	F	T	C	E	L	F	S	R	V	E	D	V	L	G	L	P	Q	N	T	M	K	I	G	I	M	D	E	E	R	R	T	T	V	N	L	K	A	C	I	K	A	A	A	D	R	V	V	F	I	N	T	G	F	L	D	R	T	G	D	E	I	H	T	S	M	E	A	G	P	M	V	R	K	G	T	M	K	S
Template Known Secondary structure																T			T	T										S					T	T								T	T	T	T																			T	G	G	G			B			G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

	479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	W	I	K	A	Y	E	R	N	N	V	L	S	G	L	F	C	G	L	R	G	K	A	Q	I	G	K	G	M	W	A	M	P	D	L	M	A	D	M	Y	S	Q	K	G	D	Q	L	R	A	G	A	N	T	A	W	V	P	S	P	T	A	A	T	L	H	A	L	H	Y	H	Q	T	N	V	Q	S	V	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	P	W	I	L	A	Y	E	D	H	N	V	D	A	G	L	A	A	G	F	S	G	R	A	Q	V	G	K	G	M	W	T	M	T	E	L	M	A	D	M	V	E	T	K	I	A	Q	P	R	A	G	A	S	T	A	W	V	P	S	P	T	A	A	T	L	H	A	L	H	Y	H	Q	V	D	V	A	A	V	Q	Q
Template Known Secondary structure	S																	T	T		T	T	T	S										T	T									T	T					T	T		S					S	S														S
Template Predicted Secondary structure
Template SS confidence
	486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.

	559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	I	A	Q	T	E	F	N	A	E	F	E	P	L	L	D	D	L	L	T	I	P	V	A	E	N	A	N	W	S	A	Q	E	I	Q	Q	E	L	D	N	N	V	Q	G	I	L	G	Y	V	V	R	W	V	E	Q	G	I	G	C	S	K	V	P	D	I	H	N	V	A	L	M	E	D	R	A	T	L	R	I	S
Query Conservation
Alig confidence												.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence	G	L	A	G	K	R	R	A	T	I	E	.	.	.	.	.	Q	L	L	T	I	P	L	A	K	E	L	A	W	A	P	D	E	I	R	E	E	V	D	N	N	C	Q	S	I	L	G	Y	V	V	R	W	V	D	Q	G	V	G	C	S	K	V	P	D	I	H	D	V	A	L	M	E	D	R	A	T	L	R	I	S
Template Known Secondary structure			T	T								.	.	.	.	.			T				B			T	T																															S							T	T
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
	566	.	.	.	570	.	.	.	.	.	.						.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640

	639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Q	H	I	A	N	W	L	R	H	G	I	L	T	K	E	Q	V	Q	A	S	L	E	N	M	A	K	V	V	D	Q	Q	N	A	G	D	P	A	Y	R	P	M	A	G	N	F	A	N	S	C	A	F	K	A	A	S	D	L	I	F	L	G	V	K	Q	P	N	G	Y	T	E	P	L	L	H	A	W	R	L	R
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence	S	Q	L	L	A	N	W	L	R	H	G	V	I	T	S	A	D	V	R	A	S	L	E	R	M	A	P	L	V	D	R	Q	N	A	.	.	.	.	Y	R	P	M	A	P	N	F	D	D	S	I	A	F	L	A	A	Q	E	L	I	L	S	G	A	Q	Q	P	N	G	Y	T	E	P	I	L	H	R	R	R	R	E
Template Known Secondary structure										T	T	S	S																						.	.	.	.						S		G	G	G													T	G	G	G	S	G	G	G		S
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
	641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.					.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.

	719	720	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	721	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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