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Job DescriptionP37330
Confidence100.00%DateThu Jan 5 11:55:16 GMT 2012
Rank1Aligned Residues709
% Identity97%Templated1d8ca_
SCOP infoTIM beta/alpha-barrel Malate synthase G Malate synthase G
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  QTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVHDLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYK
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Template Conservation         
 
   
  

    




     

     
     
  
 
 
 

  
   
 
     
   
   
 
Template Sequence  QTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVHDLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYK
Template Known Secondary structure 
TTTT

S
SS
S
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  SFLRELGYLVPQPERVTVETTGIDSEITSQAGPQLVVPAMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDPQR
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Template Sequence  SFLRELGYLVPQPERVTVETTGIDSEITSQAGPQLVVPAXNARYALNAANARWGSLYDALYGSDIIPQEGAXVSGYDPQR
Template Known Secondary structure  TSS



S









T



TT
GGGTSSSS

SS

SSS

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  GEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIELQI
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Template Sequence  GEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVGYRGDAAAPTCILLKNNGLHIELQI
Template Known Secondary structure  S
BSSS
GGGTTTTS

BSSGGGS
TTS
STT
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  DANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAA
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Template Sequence  DANGRIGKDDPAHINDVIVEAAISTILDCEDSVAAVDAEDKILLYRNLLGLXQGTLQ. . . . . . . . . . . RKLNDDRHYTAA
Template Known Secondary structure 
TTSTTGGG
TT



SSTT



ST


...........





T
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   243......250.........260.........270.........280.........290......... 300.........310.
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  DGSEISLHGRSLLFIRNVGHLMTIPVIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFA
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Template Sequence  DGSEISLHGRSLLFIRNVGHLXTIPVIWDSEGNEIPEGILDGVXTGAIALYDLKVQKNSRTGSVYIVKPKXHGPQEVAFA
Template Known Secondary structure  TS


S



SS

TTS

SS
SSS

S

S
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   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   403......410.........420.........430.........440.........450.........460.........470.........480..
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Query Sequence  NKLFTRIETMLGMAPNTLKMGIMDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEMHSVMEAGPMLRKNQMKSTPWI
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Template Sequence  NKLFTRIETXLGXAPNTLKXGIXDEERRTSLNLRSCIAQARNRVAFINTGFLDRTGDEXHSVXEAGPXLRKNQXKSTPWI
Template Known Secondary structure  T

TT

STTTTTT
TGGGS
B

GGGGGG
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   403......410.........420.........430.........440.........450.........460.........470.........480..
 
   483......490.........500.........510.........520.........530.........540.........550.........560..
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Query Sequence  KAYERNNVLSGLFCGLRGKAQIGKGMWAMPDLMADMYSQKGDQLRAGANTAWVPSPTAATLHALHYHQTNVQSVQANIAQ
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Template Sequence  KAYERNNVLSGLFCGLRGKAQIGKGXWAXPDLXADXYSQKGDQLRAGANTAWVPSPTAATLHALHYHQTNVQSVQANIAQ
Template Known Secondary structure  TT
TTTS


TT
TTT
SSSS
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   483......490.........500.........510.........520.........530.........540.........550.........560..
 
   563......570.........580.........590.........600.........610.........620.........630.........640..
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Query Sequence  TEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIHNVALMEDRATLRISSQHI
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Template Sequence  TEFNAEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIHNVALXEDRATLRISSQHI
Template Known Secondary structure  S
GGGGTS

B
SS





S



TTS



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   563......570.........580.........590.........600.........610.........620.........630.........640..
 
   643......650.........660.........670.........680.........690.........700.........710.........720..
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Query Sequence  ANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKES
Query Conservation 







 
 
 
  

 
 
  
  

  
     
    
   
 


 


  
   
  
 
 

   
   
  
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Template Conservation 









 
 
  

   
  
  

  
          
      

  
   
   
  
 
 

   
   
  
Template Sequence  ANWLRHGILTKEQVQASLENXAKVVDQQNAGDPAYRPXAGNFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKES
Template Known Secondary structure  TTSS
TTT
TT



TT
TTT
TGGGSGGG
STT
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   643......650.........660.........670.........680.........690.........700.........710.........720..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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