Job Description P76092 Confidence 99.92% Date Thu Jan 5 12:18:46 GMT 2012 Rank 111 Aligned Residues 207 % Identity 15% Template c3fleB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. Resolution 2.01 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	I	V	L	F	H	R	G	H	E	H	S	G	R	L	Q	H	L	V	D	E	L	A	M	P	D	T	.	.	A	F	Y	A	W	D	A	R	G	H	G	K	S	S	G	P	R	G	Y	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	R	S	V	R	D	V	D	E	F	V	R
Query Conservation																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	T	L	F	L	H	G	Y	G	G	S	E	R	S	E	T	F	X	V	K	Q	A	L	N	K	N	V	T	N	E	V	I	T	A	R	V	S	S	E	G	K	V	Y	F	D	K	K	L	S	A	A	N	P	I	V	K	V	E	F	K	D	N	K	N	G	N	F	K	E	N	A	Y	W	I	K	E	V	L	S
Template Known Secondary structure										T	T			G	G	G	G										T	T			S									T	T	S					S	S						S								S	S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																					.	.	.	.	.
Query SS confidence																																					.	.	.	.	.
Query Sequence		F	A	A	S	D	S	Q	V	G	L	E	E	V	V	V	I	A	Q	S	V	G	A	V	L	V	A	T	W	I	H	D	Y	A	P	A	.	.	.	.	.	I	R	G	L	V	L	A	S	P	A	F	K	V	K	L	Y	V	P	L	A	R	P	A	L	A	L	W	H	R	L	R	G	L	F	F	I	N	S	Y	V
Query Conservation																																					.	.	.	.	.
Alig confidence								.	.																												.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	K	S	Q	F	.	.	G	I	Q	Q	F	N	F	V	G	H	S	X	G	N	X	S	F	A	F	Y	X	K	N	Y	G	D	D	R	H	L	P	Q	L	K	K	E	V	N	I	A	G	V	Y	N	G	I	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	X	N	E	N	V	N	E	I	I	V	D
Template Known Secondary structure								.	.											T														T	T		T	T	S										S			T	T			B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B		T	T				B
Template Predicted Secondary structure								.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.														.	.	.	.	.	.	.	.	190	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.
Query Sequence		K	G	R	Y	L	T	H	D	R	Q	R	G	A	S	F	N	N	D	P	L	I	T	R	A	I	A	V	N	I	L	L	D	L	Y	K	T	S	E	R	I	I	R	D	A	A	A	I	T	L	P	T	Q	L	L	I	S	G	.	.	.	.	.	.	D	D	Y	V	V	H	R	Q	P	Q	I	D	F	Y	Q	R	L
Query Conservation																																																											.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	G	K	P	S	R	X	N	A	A	Y	R	Q	L	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	I	Y	C	G	K	E	I	E	V	L	N	I	Y	G	D	L	E	D	G	S	H	S	D	G	R	V	S	N	S	S	S	Q	S	L	Q	Y	L	L
Template Known Secondary structure		S	S			B	S	S							T	T	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S	T	T	S													S	S	S	S	B	S	S	S	S	B						T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		246	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence		R	S	P	L	K	E	.	.	.	.	L	H	L	L	P	G	F	Y	H	D	T	L	G	E	E	N	R	A	L	A	F	E	K	M	Q	S	F	I
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																	.	.
Template Conservation																												.	.
Template Sequence		R	G	S	T	K	S	Y	Q	E	X	K	F	K	G	A	K	A	Q	H	S	Q	L	H	E	N	K	.	.	D	V	A	N	E	I	I	Q	F	L
Template Known Secondary structure			S			S									S	G	G	G	S	T	T	G	G	G	S			.	.
Template Predicted Secondary structure																												.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions