Job Description P76092 Confidence 99.79% Date Thu Jan 5 12:18:46 GMT 2012 Rank 229 Aligned Residues 211 % Identity 19% Template c3ds8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Resolution 1.80 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		I	V	L	F	H	R	G	H	E	H	S	G	R	L	Q	H	L	V	D	E	L	A	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	A	F	Y	A	W	D	A	R	G	H	G	K	S	S	.	.	.	.	G	P	R	G	Y	S	P	S	L	A	R	S	V	R	D	V	D	E	F	V	R
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		I	I	L	I	H	G	S	G	G	N	A	S	S	L	D	K	X	A	D	Q	L	X	N	E	Y	R	S	S	N	E	A	L	T	X	T	V	N	S	E	G	K	I	K	F	E	G	K	L	T	K	D	A	K	R	P	I	I	K	F	G	F	E	Q	N	Q	A	T	P	D	D	W	S	K	W	L	K	I	A	X	E
Template Known Secondary structure								T	T			T	T	T	T										T	T													T	T	T						S				T	T		S	S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		F	A	A	S	D	S	Q	V	G	L	E	E	V	V	V	I	A	Q	S	V	G	A	V	L	V	A	T	W	I	H	D	Y	A	P	.	.	.	.	.	A	I	R	G	L	V	L	A	S	P	A	F	K	V	K	L	Y	V	P	L	A	R	P	A	L	A	L	W	H	R	L	R	G	L	F	F	I	N	S	Y	V
Query Conservation																																				.	.	.	.	.
Alig confidence								.	.																											.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	K	S	R	Y	.	.	G	F	T	Q	X	D	G	V	G	H	S	N	G	G	L	A	L	T	Y	Y	A	E	D	Y	A	G	D	K	T	V	P	T	L	R	K	L	V	A	I	G	S	P	F	N	D	L	.	.	.	.	.	.	.	.	.	.	D	P	N	D	N	G	X	D	L	S	F	K	K	L	P	N
Template Known Secondary structure								.	.			S								T													S	T	T		T	T	S										S			T	T		S	.	.	.	.	.	.	.	.	.	.							S		T	T		S	S		S	S
Template Predicted Secondary structure								.	.																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.											.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																	.	.											.	.	.	.	.	.
Query SS confidence																																																	.	.											.	.	.	.	.	.
Query Sequence		K	G	R	Y	L	T	H	D	R	Q	R	G	A	S	F	N	N	D	P	L	I	T	R	A	I	A	V	N	I	L	L	D	L	Y	K	T	S	E	R	I	I	R	D	A	A	A	I	.	.	T	L	P	T	Q	L	L	I	S	G	.	.	.	.	.	.	D	D	Y	V	V	H	R	Q	P	Q	I	D	F	Y	Q
Query Conservation																																																	.	.											.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.											.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	D	Y	F	I	K	N	Q	T	E	V	S	P	D	L	E	V	L	A	I	A	G	E	L	S	E	D	N	P	T	D	G	I	V	P	T	I	S	S	L	A	T	R	L
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	G	G	G	S		T	T										S	B	T	T	B		B		S	S	S	B					T	G	G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.																																	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		244	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		R	L	R	S	P	L	K	.	.	.	.	E	L	H	L	L	P	G	F	Y	H	D	T	L	G	E	E	N	R	A	L	A	F	E	K	M	Q	S	F	I	S	R	L	Y	A	N	K	S	Q	K	F	D	Y	Q	H	E
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																	.	.														.	.	.
Template Conservation																													.	.														.	.	.
Template Sequence		F	X	P	G	S	A	K	A	Y	I	E	D	I	Q	V	G	E	D	A	V	H	Q	T	L	H	E	T	.	.	P	K	S	I	E	K	T	Y	W	F	L	E	K	.	.	.	F	K	T	D	E	T	V	I	Q	L	D
Template Known Secondary structure		T	S	B	T	T	B	S									S	G	G	G		G	G	G	G	G	G	S	.	.													T	.	.	.				S	S
Template Predicted Secondary structure																													.	.														.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions