Job Description P76092 Confidence 99.28% Date Thu Jan 5 12:18:46 GMT 2012 Rank 458 Aligned Residues 161 % Identity 16% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.				.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		D	L	H	A	K	G	L	A	V	R	V	V	D	I	A	A	G	H	G	R	Y	V	L	D	A	L	A	N	E	P	A	V	S	D	I	L	L	R	D	Y	S	E	L	N	V	A	Q	G	Q	E	M	I	A	Q	R	G	.	.	.	M	S	G	R	V	R	F	E	Q	G	D	A	F	N	P	E	E	L	S	A	L
Query Conservation																																																										.	.	.
Alig confidence																																.																										.	.	.															.
Template Conservation																																.																																											.
Template Sequence		S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	.	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	.	F	V	R	Q	T	P
Template Known Secondary structure				T	T	S	S											T	T	S							T	T		T	T	.									S																	G	G	G	G		T	T						S					.				T	S
Template Predicted Secondary structure																																.																																											.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	R	P	T	L	A	I	V	S	G	L	Y	E	L	F	P	E	N	E	Q	V	K	N	S	L	A	G	L	A	N	A	I	E	P	G	G	I	L	I	Y	T	G	Q	P	W	H	P	Q	L	E	M	I	A	G	V	L	T	S	H	K	D	G	K	P	W	V	M	R	V	R	S	Q	G	E	M	D	S	L	V
Query Conservation
Alig confidence																.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	T	Y	D	V	V	I	I	D	T	T	D	P	.	.	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I
Template Known Secondary structure		T	T										S			.	.				S	S																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T
Template Predicted Secondary structure																.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.						.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		R	D	A	G	F	D	K	C	T	Q	R	I	D	E	W	.	.	.	.	.	G	I	F	T	V	S	M	A	V	R	R	D	N
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T	Y	P	C	G	S	I	G	T	L	V	C	S	K	K	A	G
Template Known Secondary structure					T		S										T	T	S	T	T	S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions