Job Description P76092 Confidence 99.28% Date Thu Jan 5 12:18:46 GMT 2012 Rank 459 Aligned Residues 150 % Identity 19% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		D	L	H	A	K	G	L	A	V	R	V	V	D	I	A	A	G	H	G	R	Y	V	L	D	A	L	A	N	E	P	A	V	S	D	I	L	L	R	D	Y	S	E	L	N	V	A	Q	G	Q	E	.	.	.	M	I	A	Q	R	G	M	S	G	R	V	R	F	E	Q	G	D	A	F	N	P	E	E	L	S	A	L
Query Conservation																																																				.	.	.
Alig confidence																																.																				.	.	.																						.	.
Template Conservation																																.																																												.	.
Template Sequence		P	M	T	V	S	K	E	P	K	N	V	L	V	V	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	K	S	.	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	Y	E	D	K	R	V	N	V	F	I	E	D	A	S	K	F	.	.	L	E	N	V
Template Known Secondary structure						S	S	S										T	T									T		T	T	.									S																	G	G	G	G	S	T	T						S						.	.		T	T
Template Predicted Secondary structure																																.																																												.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	R	P	T	L	A	I	V	S	G	L	Y	E	L	F	P	E	N	E	Q	V	K	N	S	L	A	G	L	A	N	A	I	E	P	G	G	I	L	I	Y	T	G	Q	P	W	H	P	Q	L	E	M	I	A	G	V	L	T	S	H	K	D	G	K	P	W	V	M	R	V	R	S	Q	G	E	M	D	S	L	V
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	T	Y	D	V	I	I	V	D	.	.	.	.	.	.	.	.	.	.	.	S	S	N	F	Y	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A
Template Known Secondary structure			S									.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570						.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		R	D	A	G	F	D	K	C	T	Q	R	I	D	.	.	.	.	.	E	W	G	I	F	T	V	S	M	A	V	R	R	D	N
Query Conservation															.	.	.	.	.
Alig confidence					.										.	.	.	.	.
Template Conservation					.
Template Sequence		K	K	L	.	F	K	K	V	E	Y	A	N	I	S	I	P	T	Y	P	C	G	C	I	G	I	L	C	C	S	K	T	D	T
Template Known Secondary structure			T	T	.		S										T	T	S	G	G	G									S	S	T	T
Template Predicted Secondary structure					.
Template SS confidence
		248	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions