Job Description P76092 Confidence 99.90% Date Thu Jan 5 12:18:46 GMT 2012 Rank 126 Aligned Residues 246 % Identity 11% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																.	.																							.	.	.
Query SS confidence																													.	.	.																.	.																							.	.	.
Query Sequence		P	G	E	H	F	F	T	T	S	D	N	T	A	L	F	Y	R	H	W	P	A	L	Q	P	G	A	K	.	.	.	K	V	I	V	L	F	H	R	G	H	E	H	S	G	R	.	.	L	Q	H	L	V	D	E	L	A	M	P	D	T	A	F	Y	A	W	D	A	R	G	.	.	.	H	G	K	S	S	G	P	R
Query Conservation																													.	.	.																.	.																							.	.	.
Alig confidence																													.	.	.																.	.																							.	.	.
Template Conservation
Template Sequence		V	E	Q	V	F	Y	A	S	K	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	L	D	A	G	G	V	Y	A	V	A	N	L	R	G	G	G	E	Y	G	K	A	W	H	D	A
Template Known Secondary structure										T	T	S											T	T				S	S												T	T									G	G	G						T	T									T	T	S	S	T	T							T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	S	P	S	L	A	R	S	V	R	D	V	D	E	F	V	R	F	A	A	S	D	S	Q	V	G	L	E	E	V	V	V	I	A	Q	S	V	G	A	V	L	V	A	T	W	I	H	D	Y	A	P	A	I	R	G	L	V	L	A	S	P	A	F	K	V	K	L	Y	V	P	L	A	R	P	A	L	A	L	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y	H	L	F	G	S	G	R	T	W	I	P
Template Known Secondary structure		T	S	G	G	G	T																	T	T	S			G	G	G							T														G	G	G		S						S					T	T	T	G	G	G	S	T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		H	R	L	R	G	L	F	F	I	N	S	Y	V	K	G	R	Y	L	T	H	D	R	Q	R	G	A	S	F	N	N	D	P	L	I	T	R	A	I	A	V	N	I	L	L	D	L	Y	K	T	S	E	R	I	I	R	D	A	A	A	I	T	L	.	.	P	T	Q	L	L	I	S	G	D	D	Y	V	V	H	R	Q
Query Conservation																																																																.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	G	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	P	E	D	F	K	T	L	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M
Template Known Secondary structure						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G				S	S												T	T		S	S	S		T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.															.	.	.	.	.	.	.	.	590	.																					.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.														.
Query SS confidence																	.	.	.	.	.														.
Query Sequence		P	Q	I	D	F	Y	Q	R	L	R	S	P	L	K	E	.	.	.	.	.	L	H	L	L	P	G	F	Y	H	D	T	L	G	.	E	E	N	R	A	L	A	F	E	K	M	Q	S	F	I	S	R	L	Y	A	N	K
Query Conservation																	.	.	.	.	.														.
Alig confidence																	.	.	.	.	.														.
Template Conservation
Template Sequence		H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N	P	A	T	A	L	L	R	I	E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y	S	F	L	F	Q	V	L	D	V	Q
Template Known Secondary structure												T	S	T	T			S								T	T		B	T	T	B		S																				T	T
Template Predicted Secondary structure
Template SS confidence
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions