Job Description P76092 Confidence 99.67% Date Thu Jan 5 12:18:46 GMT 2012 Rank 320 Aligned Residues 258 % Identity 11% Template c1lnsA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:x-prolyl dipeptidyl aminopetidase; PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl2 aminopeptidase from lactococcus lactis Resolution 2.20 Å

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		16	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
Predicted Secondary structure						.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	T	A	.	.	L	F	Y	R	H	W	P	A	L	Q	P	G	A	K	K	V	I	V	L	F	H	R	G	H	E	H	S	G	R	L	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	E	N	D	L	I	K	I	Q	I	I	R	P	K	S	T	E	K	L	P	V	V	M	T	A	S	P	Y	H	L	G	I	N	D	K	A	N	D	L	A	L	H	D	M	N	V	E	L	E	E	K	T	S	H	E	I	H	V	E	Q	K	L	P	Q	K	L	S	A	K	A	K	E	L	P	I	V	D	K	A
Template Known Secondary structure		S	S	S														S	S										S	S	T	T																							S																								S	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
													52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100															.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	V	D	E	L	A	M	P	D	T	A	F	Y	A	W	D	A	R	G	H	G	K	S	S	G	P	R	G	Y	S	P	S	L	A	R	S	V	R	D	V	D	E	F	V	R	F	A	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	Q	V	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.
Template Sequence		P	Y	R	F	T	H	G	W	T	Y	S	L	N	D	Y	F	L	T	R	G	F	A	S	I	Y	V	A	G	V	G	T	R	S	S	D	G	F	Q	T	.	.	S	G	D	Y	Q	Q	I	Y	S	M	T	A	V	I	D	W	L	N	G	R	A	R	A	Y	T	S	R	K	K	T	H	E	I	K	A	S	W	A	N
Template Known Secondary structure		S		B															T	T	T									T	T	S	T	T	S		S				.	.	T	T	S															T	T	S	S				S	S	T	T								T	T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	V	V	V	I	A	Q	S	V	G	A	V	L	V	A	T	W	I	H	D	Y	A	P	A	I	R	G	L	V	L	A	S	P	A	F	K	V	.	.	.	.	.	.	.	.	.	.	K	L	Y	V	P	L	A	R	P	A	L	A	L	W	H	R	L	R	G	L	F	F	I	N	S	Y	V	K	G	R	Y	L
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	V	A	M	T	G	K	S	Y	L	G	T	M	A	Y	G	A	A	T	T	G	V	E	G	L	E	L	I	L	A	E	A	G	I	S	S	W	Y	N	Y	Y	R	E	N	G	L	V	R	S	P	G	G	F	P	G	E	D	L	D	V	L	A	A	L	T	Y	S	R	N	L	D	G	A	D	F	L	K	G	N
Template Known Secondary structure										T											T	T	T		T	T								S			S	B						B	S	S	S	S	B				T	T		T	T												G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		T	H	D	R	Q	R	G	A	S	F	N	N	D	P	L	I	T	R	A	I	A	V	N	I	L	L	D	L	Y	K	T	S	E	R	I	I	R	D	A	A	A	I	T	L	P	T	Q	L	L	I	S	G	D	D	Y	V	V	H	R	Q	P	Q	I	D	F	Y	Q	R	L	R	S	P	L	.	K	E	L	H	L	L
Query Conservation																																																																											.
Alig confidence																											.	.	.	.	.																																												.
Template Conservation																											.	.	.	.	.
Template Sequence		A	E	Y	E	K	R	L	A	E	M	T	A	A	L	D	R	K	S	G	D	Y	N	Q	F	W	.	.	.	.	.	H	D	R	N	Y	L	I	N	T	D	K	V	K	A	D	V	L	I	V	H	G	L	Q	D	W	N	V	T	P	E	Q	A	Y	N	F	W	K	A	L	P	E	G	H	A	K	H	A	F	L	H
Template Known Secondary structure																	T	T	T								.	.	.	.	.		T	T	B	G	G	G	G	G	G	G			S								T	T			S	S		T										S		T	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	F	Y	H	D	T	L	G	E	E	N	R	A	L	A	F	E	K	M	Q	S	F	I	S	R
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		R	G	.	A	H	I	Y	M	N	S	W	Q	S	I	D	F	S	E	T	I	N	A	Y	F	V	A
Template Known Secondary structure		S		.	S	S				T	T	B	S	S
Template Predicted Secondary structure				.
Template SS confidence
		495	.		.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions