Job Description P0ABD1 Confidence 88.30% Date Thu Jan 5 11:15:12 GMT 2012 Rank 8 Aligned Residues 319 % Identity 14% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	I	S	A	W	A	T	Y	T	L	A	S	L	I	M	A	Y	H	F	H	V	R	K	N	K	G	L	S	L	S	G	I	I	A	A	I	T	G	V	R	P	Q	G	P	W	G	K	L	V	D	L	M	F	L	I	A	T	V	G	A	L	T	I	S	L	V	V	T	A	A	T	F	T	R	G	L	S	A	L
Query Conservation
Alig confidence																				.																																															.	.	.	.
Template Conservation																				.																																															.	.	.	.
Template Sequence		I	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	.	V	Y	A	K	M	S	F	L	D	P	S	P	G	G	S	Y	A	Y	A	R	R	C	F	G	P	F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	I	A	M	.	.	.	.	V	V	I	G	V	G	Y	L	S	Y	F
Template Known Secondary structure				S																.							T	T				S	S		T	T	T	G	G	G	G	T	T														T	T	T	T							.	.	.	.					T	G	G	G	S	S	S
Template Predicted Secondary structure																				.																																															.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	P	D	N	F	T	V	Q	A	F	V	I	L	L	S	G	G	I	F	C	L	S	S	W	I	G	I	N	N	G	L	Q	R	L	S	K	M	V	G	W	G	A	F	L	L	P	L	L	V	L	I	V	G	P	T	E	F	I	T	N	S	I	I	N	A	I	G	L	T	T	Q	N	F	L	Q	M	S	L
Query Conservation
Alig confidence																															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	.	K	M	I	T	R	V	Q	A	V	A	T	V	L	A	L	I	P	I	V	G	I	A	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	F	W	F	R	G	E	T	Y	M	A
Template Known Secondary structure		S					S	S	S																			S		S	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.				S			S	S
Template Predicted Secondary structure																															.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.															.	170	.	.	.	.	.	.	.	.	.	180
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		F	T	D	P	L	G	D	G	S	F	T	R	N	W	T	V	F	Y	W	L	W	W	I	S	Y	T	P	G	V	A	M	F	V	T	R	V	S	R	G	.	.	R	K	I	K	E	V	I	W	G	L	I	L	G	S	T	V	G	C	W	F	F	F	G	V	M	E	S	Y	A	I	H	Q	F	I	N	G	V	I	N
Query Conservation																																									.	.
Alig confidence																																									.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		S	S	S						T								S	T	T		T	T	G	G	G					G	G	G	S	S	S																								T	T				S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380								.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.
Query Sequence		V	P	Q	V	L	E	T	L	G	G	E	T	A	V	Q	Q	V	L	M	S	L	P	A	G	K	L	F	L	A	A	Y	L	G	V	M	I	I	F	L	A	S	H	M	D	A	V	A	Y	T	M	A	A	T	S	T	R	N	L	.	.	.	.	.	.	.	Q	E	G	D	D	P	D	R	G	L	R	L	F	W	C
Query Conservation																																																												.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T	L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T																T	T	S	S	T	T	T	S	S		S									S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	T	L	I	P	L	S	I	L	F	T	G	A	S	L	E	T	M	K	T	T	V	V	L	T	A	L	P	F	L	V	I	L	L	V	K	V	G	G	F	I	R	W	L	K	Q	D	Y	A	D	I	P	A	H	Q	V
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	.	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L	L	G	H	G	H	F	G	K	A	R	P	A	Y	L
Template Known Secondary structure									T	T	S	S	S		S	S	.	S	S	S			S	S	T	T						T	T													T		T	T		S	S	S
Template Predicted Secondary structure																	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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