Job Description P0ABD1 Confidence 100.00% Date Thu Jan 5 11:15:12 GMT 2012 Rank 1 Aligned Residues 445 % Identity 29% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	L	A	M	G	L	V	I	Y	L	A	T	S	K	Y	G	N	I	R	L	G	E	G	K	P	E	Y	S	T	L	S	W	L	F	M	F	I	C	A	G	L	G	S	S	T	L	Y	W	G	V	A	E	W	A	Y	Y	Y	Q	T	P	G	L	N	I	A	P	R	S	Q	Q	A	L	E	F	S	V	P	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	V	V	M	L	F	G	W	F	W	L	V	F	G	P	Y	A	K	K	R	L	G	N	E	P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S
Template Known Secondary structure															S	S	S	T	T	S		S	S	S	S			S	S											T					S																S		S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		F	F	H	W	G	I	S	A	W	A	T	Y	T	L	A	S	L	I	M	A	Y	H	F	H	V	R	K	N	K	G	L	S	L	S	G	I	I	A	A	I	T	G	V	R	.	P	Q	G	P	W	G	K	L	V	D	L	M	F	L	I	A	T	V	G	A	L	T	I	S	L	V	V	T	A	A	T	F	T	R	G
Query Conservation																																														.
Alig confidence																																														.
Template Conservation
Template Sequence		L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C
Template Known Secondary structure					T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	L	T	G	L	P	D	N	F	T	V	Q	A	F	V	I	L	L	S	G	G	I	F	C	L	S	S	W	I	G	I	N	N	G	L	Q	R	L	S	K	M	V	G	W	G	A	F	L	L	P	L	L	V	L	I	V	G	P	T	E	F	I	T	N	S	I	I	N	A	I	G	L	T	T	Q	N	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P
Template Known Secondary structure			T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	S	L	F	T	D	P	L	G	D	G	S	F	T	R	N	W	T	V	F	Y	W	L	W	W	I	S	Y	T	P	G	V	A	M	F	V	T	R	V	S	R	G	R	K	I	K	E	V	I	W	G	L	I	L	G	S	T	V	G	C	W	F	F	F	G	V	M	E	S	Y	A	I	H	Q	F	I	N	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I
Template Known Secondary structure					T					S	S								T											T											T		S	S																																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	V	P	Q	V	L	E	T	L	G	G	E	T	A	V	Q	Q	V	L	M	S	L	P	A	G	K	L	F	L	A	A	Y	L	G	V	M	I	I	F	L	A	S	H	M	D	A	V	A	Y	T	M	A	A	T	S	T	R	N	L	Q	E	G	D	D	P	D	R	G	L	R	L	F	W	C	V	V	I	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I
Template Known Secondary structure									G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S		S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	S	I	L	F	T	G	A	S	L	E	T	M	K	T	T	V	V	L	T	A	L	P	F	L	V	I	L	L	V	K	V	G	G	F	I	R	W	L	K	Q	D	Y	A	D
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		I	G	I	V	L	L	A	L	G	G	.	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure											S	.	S																																T
Template Predicted Secondary structure												.
Template SS confidence
		459	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.