Job Description P0ABD1 Confidence 96.73% Date Thu Jan 5 11:15:12 GMT 2012 Rank 6 Aligned Residues 337 % Identity 10% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	F	F	H	W	G	I	S	A	W	A	T	Y	T	L	A	S	L	I	M	A	Y	H	F	H	V	R	K	N	K	G	L	S	L	S	G	I	I	A	A	I	T	G	V	R	P	Q	G	P	W	G	K	L	V	D	L	M	F	L	I	A	T	V	G	A	L	T	I	S	L	V	V	T	A	A	T	F	T	R
Query Conservation
Alig confidence																									.			.																		.	.	.	.	.	.	.
Template Conservation																									.			.																		.	.	.	.	.	.	.
Template Sequence		L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	.	I	F	.	I	E	K	G	I	Y	T	I	P	E	F	V	E	K	R	F	N	.	.	.	.	.	.	.	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L
Template Known Secondary structure		G	G	G																		T			.			.			T	T			S									T		.	.	.	.	.	.	.																		T
Template Predicted Secondary structure																									.			.																		.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	A	L	T	G	L	P	D	N	F	T	V	Q	A	F	V	I	L	L	S	G	G	I	F	C	L	S	S	W	I	G	I	N	N	G	L	Q	R	L	S	K	M	V	G	W	G	A	F	L	L	P	L	L	V	L	I	V	G	P	T	E	F	I	T	N	S	I	I	N	A	I	G	L	T	T	Q	N	F
Query Conservation
Alig confidence												.	.																	.	.	.																																		.
Template Conservation												.	.																	.	.	.																																		.
Template Sequence		A	L	E	T	I	L	G	I	P	L	.	.	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	.	.	.	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	.	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F
Template Known Secondary structure							T	T				.	.														T	T		.	.	.			S																										T	T	S			.												G	G	G	G
Template Predicted Secondary structure												.	.																	.	.	.																																		.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		L	Q	M	S	L	F	T	D	P	L	G	D	G	S	F	T	R	N	W	T	V	F	Y	W	L	W	W	I	S	Y	T	P	G	V	.	.	.	A	M	F	V	T	R	V	S	R	G	R	K	I	K	E	V	I	W	G	L	I	L	G	S	T	V	G	C	W	F	F	F	G	V	M	E	S	Y	A	I	H	Q	F
Query Conservation																																				.	.	.
Alig confidence											.	.																								.	.	.
Template Conservation											.	.
Template Sequence		E	M	I	L	D	Q	S	N	P	.	.	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V
Template Known Secondary structure			S	S			S	S	S	S	.	.	G	G	G	G	S		T	T					S	T									T	T	T	T									S	S	S																			G	G	G	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		317	.	.	320	.	.	.	.	.	.	.	.	.	330										.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Query Sequence		I	N	G	V	I	N	V	P	Q	V	L	E	T	L	.	.	.	.	.	.	.	.	.	G	G	E	T	A	V	Q	Q	V	L	M	S	L	P	A	G	K	L	F	L	A	A	Y	L	G	V	M	I	I	F	L	A	S	H	M	D	A	V	A	Y	T	M	A	A	T	S	T	.	.	.	.	.	R	N	L	Q	E
Query Conservation																.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.															.	.																																.	.	.	.	.
Template Conservation																																							.	.
Template Sequence		I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	.	.	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P
Template Known Secondary structure														T	T			S					S	S	S	G	G	G							T	T			.	.	T	T																																T							S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.							.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		G	D	D	P	D	R	G	L	R	L	F	W	C	V	V	I	T	L	I	P	L	S	I	L	F	T	.	.	.	.	.	.	G	A	S	L	E	T	M	K	T	T	V	V	L	T	A	L	P	F	L	V	I	L	L	V	K	V	G
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F
Template Known Secondary structure			S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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