Job Description P0ABD1 Confidence 97.20% Date Thu Jan 5 11:15:12 GMT 2012 Rank 5 Aligned Residues 349 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	W	G	I	S	A	W	A	T	Y	T	L	A	S	L	I	M	A	Y	H	F	H	V	R	K	N	K	G	L	S	L	S	G	I	I	A	A	I	T	G	V	R	P	Q	G	P	W	G	K	L	V	D	L	M	F	L	I	A	T	V	G	A	L	T	I	S	L	V	V	T	A	A	T	F	T	R	G	L	S
Query Conservation
Alig confidence																						.																	.	.	.	.	.	.
Template Conservation																						.																	.	.	.	.	.	.
Template Sequence		V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	.	F	T	Q	S	A	A	I	R	W	G	I	N	F	T	V	A	.	.	.	.	.	.	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D
Template Known Secondary structure																						.			T														.	.	.	.	.	.	T	T	T	T	S		T	T	T	T
Template Predicted Secondary structure																						.																	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	G	L	P	D	N	F	T	V	Q	A	F	V	I	L	L	S	G	G	I	F	C	L	S	S	W	I	G	I	N	N	G	L	Q	R	L	S	K	M	V	G	W	G	A	F	L	L	P	L	L	V	L	I	V	G	P	T	E	F	I	T	N	S	I	I	N	A	I	G	L	T	T	Q	N	F	L	Q	M
Query Conservation
Alig confidence																																	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	.	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	M	L	D	G	A	D	V	S	L	G
Template Known Secondary structure																													T	T			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.								T
Template Predicted Secondary structure																																	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.															.	.	.	.	.	.	190	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	F	T	D	P	L	G	D	G	S	F	T	R	N	W	T	V	F	Y	W	L	W	W	I	S	Y	T	P	G	V	A	M	F	V	T	R	V	S	R	G	R	K	I	K	E	V	I	W	G	L	I	L	G	S	T	V	G	C	W	F	F	F	G	V	M	E	S	Y	A	I	H	Q	F	I	N	G	V	I	N
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	.	.	.
Template Known Secondary structure				T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T																																		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Q	V	L	E	T	L	G	G	E	T	A	V	Q	Q	V	L	M	S	L	P	A	G	K	L	F	L	A	A	Y	L	G	V	M	I	I	F	L	A	S	H	M	D	A	V	A	Y	T	M	A	A	T	S	T	R	N	L	Q	E	G	D	D	P	D	R	G	L	R	L	F	W	C	V	V	I	T	L	I	P
Query Conservation
Alig confidence																																																											.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	.	.	.	.	.	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G
Template Known Secondary structure								S		S											T																				T	T						T											.	.	.	.	.	S	T	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	I	L	F	T	G	A	S	L	E	T	M	K	T	T	V	V	L	T	A	L	P	F	L	V	I	L	L	V	K	V	G	G	F	I	R	W	L	K	Q	D	Y	A	D	I	P	A	H	Q	V	E	H	Y	L	P	Q	T	P	V
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		L	L	M	M	P	W	Q	F	.	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G
Template Known Secondary structure				T		G	G	G	T	.														T	T													T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T
Template Predicted Secondary structure										.
Template SS confidence
		348	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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