Job Description P32055 Confidence 99.95% Date Thu Jan 5 11:49:02 GMT 2012 Rank 59 Aligned Residues 263 % Identity 12% Template c3iusB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a functionally unknown conserved protein2 from silicibacter pomeroyi dss Resolution 1.66 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		K	Q	R	V	F	I	A	G	H	R	G	M	V	G	S	A	I	R	R	Q	L	E	Q	R	G	D	V	E	L	V	L	R	T	R	D	E	L	N	L	L	D	S	R	A	V	H	D	F	F	A	S	E	R	I	D	Q	V	Y	L	A	A	A	K	V	G	G	I	V	A	N	N	T	Y	.	.	.	P	A	D	F
Query Conservation																																																																											.	.	.
Alig confidence											.																												.	.	.	.	.	.	.	.																													.	.	.
Template Conservation											.																												.	.	.	.	.	.	.	.
Template Sequence		T	G	T	L	L	S	F	G	H	.	G	Y	T	A	R	V	L	S	R	A	L	A	P	Q	G	W	R	I	I	G	T	S	R	N	P	D	Q	.	.	.	.	.	.	.	.	X	E	A	I	R	A	S	G	A	E	P	L	L	W	P	G	E	E	P	S	L	D	G	V	T	H	L	L	I	S	T	A	P	D	S
Template Known Secondary structure									T		.												G	G	G	T								S		G	G	G	.	.	.	.	.	.	.	.							T	T	S					T	T	T	S					T	T											B	T
Template Predicted Secondary structure											.																												.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.									.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	Q	N	M	M	I	E	S	N	I	I	H	A	A	H	Q	N	D	V	N	K	L	L	F	L	G	S	S	C	I	Y	P	K	L	A	K	Q	P	M	A	E	S	E	L	L	Q	G	T	L	E	P	T	N	E	P	Y	A	I	A	K	I	A	G	I	K	L	C	E	S	Y	N	R	Q	Y	G	R	D	Y	R
Query Conservation
Alig confidence																																											.	.	.	.	.																								.	.	.
Template Conservation																																											.	.	.	.	.																								.	.	.
Template Sequence		G	G	D	P	V	L	A	A	L	G	D	Q	I	A	A	R	A	A	Q	F	R	W	V	G	Y	L	S	T	T	A	V	Y	G	D	H	D	G	A	W	V	D	.	.	.	.	.	E	T	T	P	L	T	P	T	A	A	R	G	R	W	R	V	X	A	E	Q	Q	W	Q	.	.	.	A	V	P	N	L	P	L	H
Template Known Secondary structure		T	B														T	G	G	G		S								G	G	G	S				T	T					.	.	.	.	.	T	T	S						S															.	.	.	T	S	T	T
Template Predicted Secondary structure																																											.	.	.	.	.																								.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	M	P	T	N	L	Y	G	P	H	D	N	F	H	P	S	N	S	H	V	I	P	A	L	L	R	R	F	H	E	A	T	A	Q	N	A	P	D	V	V	V	W	G	S	G	T	P	M	R	E	F	L	H	V	D	D	M	A	A	A	S	I	H	V	M	E	L	A	H	E	V	W	L	E	N	T	Q	P	M
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Template Sequence		V	F	R	L	A	G	I	Y	G	P	G	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	G	G	I	R	R	I	I	K	P	G	Q	V	F	S	R	I	H	V	E	D	I	A	Q	V	L	A	A	S	X	A	R	P	D	P	G	A	V	.	.	.	.	.	.
Template Known Secondary structure										B	T	T	B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T			B																		S			T	T			.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.																							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.									.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.															.								.
Query SS confidence																																									.	.	.	.	.	.	.	.															.								.
Query Sequence		L	S	H	I	N	V	G	T	G	V	D	C	T	I	R	E	L	A	Q	T	I	A	K	V	V	G	Y	K	G	R	V	V	F	D	A	S	K	P	D	.	.	.	.	.	.	.	.	G	T	P	R	K	L	L	D	V	T	R	L	H	Q	.	L	G	W	Y	H	E	I	.	S	L	E	A	G	L	A	S	T	Y
Query Conservation																																									.	.	.	.	.	.	.	.															.								.
Alig confidence		.	.	.																																					.	.	.	.	.	.	.	.															.								.
Template Conservation		.	.	.
Template Sequence		.	.	.	Y	N	V	C	D	D	E	P	V	P	P	Q	D	V	I	A	Y	A	A	E	L	Q	G	L	P	L	P	P	A	V	D	F	D	K	A	D	L	T	P	X	A	R	S	F	Y	S	E	N	K	R	V	R	N	D	R	I	K	E	E	L	G	V	R	L	K	Y	P	N	Y	R	V	G	L	E	A	L	Q
Template Known Secondary structure		.	.	.						S			B													T	T									G	G	G											T	T													T	T					S			S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	W	F	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions