Phyre 2 alignment of P32055 with c1t2aC

Job Description P32055
Confidence 100.00% Date Thu Jan 5 11:49:02 GMT 2012

Rank 33 Aligned Residues 298

% Identity 15% Template c1t2aC_

PDB info PDB header:structural genomics,lyase Chain: C: PDB Molecule:gdp-mannose 4,6 dehydratase; PDBTitle: crystal structure of human gdp-d-mannose 4,6-dehydratase

Resolution 1.84 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	Q	R	V	F	I	A	G	H	R	G	M	V	G	S	A	I	R	R	Q	L	E	Q	R	G	D	V	E	L	V	L	R	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	N	L	L	D	S	R	A	V	H	D	F	F	A	S	E	R	I	D	Q	V	Y	L	A	A	A	K
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																																																																.
Template Sequence	R	N	V	A	L	I	T	G	I	T	G	Q	D	G	S	Y	L	A	E	F	L	L	E	K	G	Y	E	V	H	G	I	V	R	R	S	S	S	F	N	T	G	R	I	E	H	L	Y	N	M	K	L	H	Y	G	D	L	T	D	S	T	C	L	V	K	I	I	N	E	V	K	P	T	E	I	Y	N	L	G	A	.
Template Known Secondary structure								T	T	T	S													T	T											S	S				T	T	T	G	G	G										T	T															S							S	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
	23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	G	I	V	A	N	N	T	Y	P	A	D	F	I	Y	Q	N	M	M	I	E	S	N	I	I	H	A	A	H	Q	N	D	V	N	K	L	L	F	L	G	S	S	C	I	Y	P	K	L	A	K	Q	P	M	A	E	S	E	L	L	Q	G	T	L	E	P	T	N	E	P	Y	A	I	A	K	I	A	G	I	K
Query Conservation
Alig confidence																																													.	.
Template Conservation																																													.	.
Template Sequence	Q	S	H	V	K	I	S	F	D	L	A	E	Y	T	A	D	V	D	G	V	G	T	L	R	L	L	D	A	V	K	T	C	G	L	I	N	S	V	K	F	Y	Q	A	S	.	.	T	S	E	L	Y	G	K	V	Q	E	I	P	Q	K	E	T	T	P	F	Y	P	R	S	P	Y	G	A	A	K	L	Y	A	Y	W
Template Known Secondary structure										S									T													T	T		T	T	T								.	.		G	G	G	G	S	S		S	S	S	S	B		T	T	S						S
Template Predicted Secondary structure																																													.	.
Template SS confidence
	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	C	E	S	Y	N	R	Q	Y	G	R	D	Y	R	S	V	M	P	T	N	L	Y	G	P	H	D	N	F	H	P	S	N	S	H	V	I	P	A	L	L	R	R	F	H	E	A	T	A	Q	N	A	P	D	V	V	V	W	G	S	G	T	P	M	R	E	F	L	H	V	D	D	M	A	A	A	S	I	H	V	M
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence	I	V	V	N	F	R	E	A	Y	N	L	F	A	V	N	G	I	L	F	N	H	E	S	P	R	R	G	A	N	F	.	.	.	.	.	V	T	R	K	I	S	R	S	V	A	K	I	Y	L	G	Q	L	E	C	F	S	L	G	N	L	D	A	K	R	D	W	G	H	A	K	D	Y	V	E	A	M	W	L	M	L
Template Known Secondary structure																								T	T	S		T	T	S	.	.	.	.	.														T	T	S		S					S		T	T
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.																						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	L	A	H	E	V	W	L	E	N	T	Q	P	M	L	S	H	I	N	V	G	T	G	V	D	C	T	I	R	E	L	A	Q	T	I	A	K	V	V	G	Y	K	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	F	D	A	S	K	P	D	G	T	P	R	K	L
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	N	.	.	.	.	.	.	.	.	.	.	D	E	P	E	D	F	V	I	A	T	G	E	V	H	S	V	R	E	F	V	E	K	S	F	L	H	I	G	K	T	I	V	W	E	G	K	N	E	N	E	V	G	R	C	K	E	T	G	K	V	H	V	T	V	D	L	K	Y	Y	R	P	T	E	V	D	F	L	Q
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	S	S									S															T	T	T							S		G	G	G						T	T	T									G	G	G	S		S	S				B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Template SS confidence
	264	.											.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

	285	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	L	D	V	T	R	L	H	Q	.	L	G	W	Y	H	E	I	S	L	E	A	G	L	A	S	T	Y	Q	W	F	L	E	N	Q	D	R
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	G	D	C	T	K	A	K	Q	K	L	N	W	K	P	R	V	A	F	D	E	L	V	R	E	M	V	H	A	D	V	E	L	M	R	T
Template Known Secondary structure	B															S
Template Predicted Secondary structure
Template SS confidence
	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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