Job Description P0AAD4 Confidence 6.31% Date Thu Jan 5 11:12:36 GMT 2012 Rank 9 Aligned Residues 161 % Identity 7% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		S	Y	M	D	G	N	I	R	K	L	R	W	V	F	I	I	G	S	A	I	P	L	V	A	Y	I	F	W	.	.	.	Q	V	A	T	L	G	S	I	D	S	T	T	F	M	G	L	L	A	N	H	A	G	L	N	G	L	L	Q	A	L	R	E	M	V	A	S	P	H	V	E	L	A	V	H	L	F	A	D	L
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		S	F	L	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T	T	I	G	L	S	A	K	N	A	I
Template Known Secondary structure			S	S					T	T																			T	T		S	S	S					G	G	G																T	T			B
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.										.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	T	S	F	L	G	V	A	L	G	L	F	D	Y	L	A	D	L	F	Q	R	S	N	T	V	G	G	R	L	Q	T	G	A	I	T	F	L	P	P	L	A	F	A	L	F	.	.	.	.	.	.	.	.	.	Y	P	R	G	F	V	M	A	L	G	Y	A	G	V	A	L	A	V	L	A	L	I	I	P
Query Conservation																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T	A	T	V	L	A	I	F	F	V	P
Template Known Secondary structure											T	T	S	S				T	T									T	T																				T	T		S	S	S																				T	T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		944	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	L	T	W	Q	S	R	K	H	N	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	F	V	V	V	R	R	R	F	S	R	K
Template Known Secondary structure		S	S								T	S
Template Predicted Secondary structure
Template SS confidence
		1024	.	.	.	.	.	1030	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions