Job Description P0AAD4 Confidence 96.42% Date Thu Jan 5 11:12:36 GMT 2012 Rank 7 Aligned Residues 366 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		R	T	L	G	S	V	F	I	V	A	G	T	T	I	G	A	G	M	L	A	M	P	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	V	G	F	S	V	T	L	I	L	L	I	G	L	W	A	L	M	C	Y	.	T	A	L	L	L	L	E	V	Y	Q	H	V	P	A	D	T	G
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation
Template Sequence		R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L
Template Known Secondary structure																																	T			T	T	S		S	S														S																		T	T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																										.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																																										.	.	.	.	.	.
Query Sequence		L	G	T	L	A	K	R	Y	L	G	R	Y	.	.	.	.	.	G	Q	W	L	T	G	F	S	M	M	F	L	M	Y	A	L	T	A	A	Y	I	S	G	A	G	E	L	L	A	S	S	I	S	D	W	T	G	I	S	M	S	A	T	A	G	V	L	L	F	T	F	V	A	G	G	V	V	.	.	.	.	.	.
Query Conservation														.	.	.	.	.																																																										.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V
Template Known Secondary structure		G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S																			T	T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	V	G	T	S	L	V	D	L	F	N	R	F	L	F	S	A	K	I	I	F	L	V	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	L	L	L	P	H	I	H	K	V	N	L	L	T	L	P	L	Q	Q	G	L	A	L	S	A	I	P	V	I	F	T	S	F	G	F	H	G	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S
Template Known Secondary structure			S																								S																									T			T	T	T	T	S	S								T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		V	P	S	I	V	S	Y	M	D	G	N	I	R	K	L	R	W	V	F	I	I	G	S	A	I	P	L	V	A	Y	I	F	W	Q	V	A	T	L	G	S	I	D	S	T	T	F	M	G	.	.	.	L	L	A	N	H	A	G	L	N	G	L	L	Q	A	L	R	E	M	V	A	S	P	H	V	E	L	A	V	H
Query Conservation																																																		.	.	.
Alig confidence																																																		.	.	.
Template Conservation
Template Sequence		P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X
Template Known Secondary structure												T	T	T																																				T						T	T		S										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		L	F	A	D	L	A	L	A	T	S	F	L	G	V	A	L	G	L	F	D	Y	L	A	D	L	F	Q	R	S	N	T	V	G	G	R	L	Q	T	G	A	I	T	F	L	P	P	L	A	F	A	L	F	Y	.	.	.	P	R	G	F	V	M	A	L	G	Y	A	G	V	A	L	A	V	L	A	L	I	I	P	S
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F
Template Known Secondary structure																							T	T	T	T		S	S																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	W	Q	S	R	K	H	N	P	Q	A	G	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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