Phyre 2 alignment of P33195 with d3tata

Job Description P33195
Confidence 98.98% Date Thu Jan 5 11:51:15 GMT 2012

Rank 219 Aligned Residues 317

% Identity 14% Template d3tata_

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 3.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.						.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G
Query Conservation																																	.	.	.	.	.
Alig confidence								.	.	.																							.	.	.	.	.																								.	.	.	.	.	.
Template Conservation								.	.	.																																																			.	.	.	.	.	.
Template Sequence	G	A	S	L	Y	L	P	.	.	.	M	E	G	L	N	C	Y	R	H	A	I	A	P	L	L	F	G	A	D	H	P	V	L	K	Q	Q	R	V	A	T	I	Q	T	L	G	G	S	G	A	L	K	V	G	A	D	F	L	K	R	Y	.	.	.	.	.	.	F	P	E	S	G	V	W	V	S	D	P	T	W	E
Template Known Secondary structure	S	S						.	.	.	T	T														T		S	S						T	T							B	S																	.	.	.	.	.	.		S	S							S	S			T
Template Predicted Secondary structure								.	.	.																																																			.	.	.	.	.	.
Template SS confidence
	66	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.

	607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.			.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.			.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.
Predicted Secondary structure																						.	.																												.									.	.
Query SS confidence																						.	.																												.									.	.
Query Sequence	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	.	.	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	.	S	T	H	G	V	Y	E	E	.	.	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D
Query Conservation																						.	.																												.									.	.
Alig confidence																						.	.																												.									.	.
Template Conservation
Template Sequence	N	H	V	A	I	F	A	G	A	G	F	E	V	S	T	Y	P	W	Y	D	E	A	T	N	G	V	R	F	N	D	L	L	A	T	L	K	T	L	P	A	R	S	I	V	L	L	H	P	C	C	H	N	P	T	G	A	D	L	T	N	D	Q	W	D	A	V	I	E	I	L	K	A	R	E	L	I	P	F	L	D
Template Known Secondary structure	T							T	T	T											T	T	T	S	S											T	T			S	S							S	S	S		S	S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
	142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	682	.									.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence	G	A	.	.	.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence	I	A	Y	Q	G	F	G	A	G	M	E	E	D	A	Y	A	I	R	A	I	A	S	A	G	L	P	A	L	V	S	N	S	F	S	K	I	F	S	L	Y	.	.	.	.	G	E	R	V	G	G	L	S	V	M	C	E	D	A	E	A	A	G	R	V	L	G	Q	L	K	A	T	V	R	R	N	Y	S	S	P	P
Template Known Secondary structure	B	S		T	T	S	S	S														T	T	T							B							T		T	.	.	.	.	T	T			B							S	S	T	T													T	T	T	T	T	S	S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

	754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I
Query Conservation
Alig confidence																								.																							.	.	.	.	.	.	.	.
Template Conservation																								.																							.	.	.	.	.	.	.	.
Template Sequence	N	F	G	A	Q	V	V	A	A	V	L	N	D	E	A	L	K	A	S	W	L	A	E	.	V	E	E	M	R	T	R	I	L	A	M	R	Q	E	L	V	K	V	L	S	T	E	.	.	.	.	.	.	.	.	M	P	E	R	N	F	D	Y	L	L	N	Q	R	G	M	F	S	Y	T	G	L	S	A	A	Q	V
Template Known Secondary structure	S												S											.																		T	T	T	T	T	.	.	.	.	.	.	.	.		T	T	S		T	T							S	S	B
Template Predicted Secondary structure																								.																							.	.	.	.	.	.	.	.
Template SS confidence
	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.									.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

	834	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I
Query Conservation
Alig confidence													.	.	.	.		.	.	.								.
Template Conservation													.	.	.	.		.	.	.								.
Template Sequence	D	R	L	R	E	E	F	G	V	Y	L	I	.	.	.	.	A	.	.	.	S	G	R	M	C	V	A	.	G	L	N	T	A	N	V	Q	R	V	A	K	A	F	A	A	V
Template Known Secondary structure				T	T	T	T						.	.	.	.	S	.	.	.	S	S			B	T	T	.	S			T	T	T
Template Predicted Secondary structure													.	.	.	.		.	.	.								.
Template SS confidence
	371	.	.	.	.	.	.	.	.	380	.	.					.				.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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