Phyre 2 alignment of P33195 with d2c0ra1

Job Description P33195
Confidence 99.60% Date Thu Jan 5 11:51:15 GMT 2012

Rank 103 Aligned Residues 311

% Identity 14% Template d2c0ra1

SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like

Resolution 1.2

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.				.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.			.	.	.	.	.
Predicted Secondary structure																							.	.	.																																																	.	.
Query SS confidence																							.	.	.																																																	.	.
Query Sequence	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	.	.	A	H	M	A	G
Query Conservation																							.	.	.																																																	.	.
Alig confidence																							.	.	.																						.	.	.	.	.	.	.	.																				.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence	G	A	V	Y	E	A	V	H	N	E	A	Q	A	R	L	L	A	L	L	G	N	P	T	G	Y	K	V	L	F	I	Q	G	G	A	S	T	Q	F	A	M	I	P	M	N	F	L	.	.	.	.	.	.	.	.	K	E	G	Q	T	A	N	Y	V	M	T	G	S	W	A	S	K	A	L	K	E	A	K	L	I	G
Template Known Secondary structure	S																		T	T			S	S							S	S															.	.	.	.	.	.	.	.		T	T									S														S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	.	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G
Query Conservation																																							.
Alig confidence																										.	.												.									.	.	.	.	.	.
Template Conservation																										.	.																					.	.	.	.	.	.
Template Sequence	D	T	H	V	A	A	S	S	E	A	S	N	Y	M	T	L	P	K	L	Q	E	I	Q	L	Q	.	.	D	N	A	A	Y	L	H	L	T	S	N	E	T	I	E	G	A	Q	F	K	.	.	.	.	.	.	A	F	P	D	T	G	S	V	P	L	I	G	D	M	S	S	D	I	L	S	R	P	F	D	L	N	Q
Template Known Secondary structure									G	G	G	T	T		S				G	G	G					.	.	T	T								S			T	T	T	T				S	.	.	.	.	.	.	S					T	T	S							T	T	T	T	T	S	S				G	G	G
Template Predicted Secondary structure																										.	.																					.	.	.	.	.	.
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

	696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A
Query Conservation
Alig confidence	.	.	.													.	.	.	.	.	.
Template Conservation	.	.	.													.	.	.	.	.	.
Template Sequence	.	.	.	F	G	L	V	Y	A	G	A	Q	K	N	L	.	.	.	.	.	.	G	P	S	G	V	T	V	V	I	V	R	E	D	L	V	A	E	S	P	K	H	L	P	T	M	L	R	Y	D	T	Y	V	K	N	N	S	L	Y	N	T	P	P	S	F	G	I	Y	M	V	N	E	V	L	K	W	I	E	E	R
Template Known Secondary structure	.	.	.		S						T	T	T	T	T	.	.	.	.	.	.			S	S								G	G	G	S	S	S			T	T	S		G	G	G								T	T	T		S	S																				T
Template Predicted Secondary structure	.	.	.													.	.	.	.	.	.
Template SS confidence
				188	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L
Query Conservation
Alig confidence																																																			.	.	.																							.
Template Conservation																																																			.	.	.																							.
Template Sequence	G	G	L	E	G	V	Q	Q	A	N	R	K	K	A	S	L	I	Y	D	A	I	D	Q	S	G	G	F	Y	R	G	C	V	D	V	D	S	R	S	D	M	N	I	T	F	R	L	A	S	E	E	.	.	.	L	E	K	E	F	V	K	A	S	E	Q	E	G	F	V	G	L	K	G	H	R	S	.	V	G	G	L
Template Known Secondary structure	T																						T	S	T	T	S	S			S	S		G	G	G	B		S	S							S				.	.	.												T	T			S		B			T	T	.	T		S
Template Predicted Secondary structure																																																			.	.	.																							.
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.

	856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	A	S	I	Y	N	A	V	P	Y	E	S	C	E	A	L	V	Q	F	M	E	H	F	K	R	S
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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