Phyre 2 alignment of P33195 with d1w23a

Job Description P33195
Confidence 99.57% Date Thu Jan 5 11:51:15 GMT 2012

Rank 111 Aligned Residues 312

% Identity 11% Template d1w23a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like

Resolution 1.08

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.				.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																																.	.
Query SS confidence																							.	.	.																																																.	.
Query Sequence	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	.	.	S	A	H	M	A	G
Query Conservation																							.	.	.																																																.	.
Alig confidence																							.	.	.																					.		.	.	.	.	.	.	.																			.	.
Template Conservation																																														.		.	.	.	.	.	.	.
Template Sequence	S	Q	S	Y	E	E	V	H	E	Q	A	Q	N	L	L	R	E	L	L	Q	I	P	N	D	Y	Q	I	L	F	L	Q	G	G	A	S	L	Q	F	T	M	L	P	M	N	L	.	L	.	.	.	.	.	.	.	T	K	G	T	I	G	N	Y	V	L	T	G	S	W	S	E	K	A	L	K	E	A	K	L	L	G
Template Known Secondary structure	S																			T			T	T							S	S														.		.	.	.	.	.	.	.		T	T									S												T	T	S
Template Predicted Secondary structure																																														.		.	.	.	.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

	617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F
Query Conservation
Alig confidence																										.	.																		.	.	.	.	.																			.	.	.	.
Template Conservation																										.	.																		.	.	.	.	.																			.	.	.	.
Template Sequence	E	T	H	I	A	A	S	T	K	A	N	S	Y	Q	S	I	P	D	F	S	E	F	Q	L	N	.	.	E	N	D	A	Y	L	H	I	T	S	N	N	T	I	Y	G	T	.	.	.	.	.	Q	Y	Q	N	F	P	E	I	N	H	A	P	L	I	A	D	M	S	.	.	.	.	S	D	I	L	S	R	P	L	K
Template Known Secondary structure									G	G	G	T	S		S				G	G	G					.	.	T	T								S			T	T	T	T		.	.	.	.	.			S	S						S	S							T	.	.	.	.	T	T	T	T	S	S
Template Predicted Secondary structure																										.	.																		.	.	.	.	.																			.	.	.	.
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.

	697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E
Query Conservation
Alig confidence															.	.	.	.	.																			.
Template Conservation															.	.	.	.	.																			.
Template Sequence	V	N	Q	F	G	M	I	Y	A	G	A	Q	K	N	.	.	.	.	.	L	G	P	S	G	V	T	V	V	I	V	K	K	D	L	L	N	T	.	K	V	E	Q	V	P	T	M	L	Q	Y	A	T	H	I	K	S	D	S	L	Y	N	T	P	P	T	F	S	I	Y	M	L	R	N	V	L	D	W	I	K	D	L
Template Known Secondary structure	G	G	G		S						T	T	T	T	.	.	.	.	.	T	S		T	T													S	.			T	T			G	G	G								T	T	T		S	S																				T
Template Predicted Secondary structure															.	.	.	.	.																			.
Template SS confidence
	184	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

		777	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L
Query Conservation	.
Alig confidence	.																																																		.	.	.																								.
Template Conservation																																																			.	.	.																								.
Template Sequence	G	G	A	E	A	I	A	K	Q	N	E	E	K	A	K	I	I	Y	D	T	I	D	E	S	N	G	F	Y	V	G	H	A	E	K	G	S	R	S	L	M	N	V	T	F	N	L	R	N	E	E	.	.	.	L	N	Q	Q	F	L	A	K	A	K	E	Q	G	F	V	G	L	N	G	H	R	S	V	.	G	G	C
Template Known Secondary structure	T																						T	T	T	T	S	S			S	S		G	G	G	B		S	S							S	S			.	.	.												T	T			S		B			T	T	T	.		S
Template Predicted Secondary structure																																																			.	.	.																								.
Template SS confidence
	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.

	856	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	A	S	I	Y	N	A	V	P	I	D	A	C	I	A	L	R	E	L	M	I	Q	F	K	E	N	A
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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