Phyre 2 alignment of P33195 with d1gc0a

Job Description P33195
Confidence 99.38% Date Thu Jan 5 11:51:15 GMT 2012

Rank 165 Aligned Residues 288

% Identity 18% Template d1gc0a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N
Query Conservation
Alig confidence																				.																.	.	.	.	.	.	.	.																						.
Template Conservation																				.																.	.	.	.	.	.	.	.																						.
Template Sequence	N	L	L	E	A	R	M	A	S	L	E	G	G	E	A	G	L	A	L	.	A	S	G	M	G	A	I	T	S	T	L	W	T	L	L	.	.	.	.	.	.	.	.	R	P	G	D	E	V	L	L	G	N	T	L	Y	G	C	T	F	A	F	L	H	.	H	G	I	G	E	F	G	V	K	L	R	H	V	D	M
Template Known Secondary structure												T		S						.	S	S														.	.	.	.	.	.	.	.		T	T							S	S			S								.		T	G	G	G	G	T								T
Template Predicted Secondary structure																				.																.	.	.	.	.	.	.	.																						.
Template SS confidence
	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T
Query Conservation
Alig confidence												.	.	.																																										.	.
Template Conservation												.	.	.																																										.	.
Template Sequence	A	D	L	Q	A	L	E	A	A	M	T	.	.	.	P	A	T	R	V	I	Y	F	E	S	P	A	N	P	N	M	H	M	A	D	I	A	G	V	A	K	I	A	R	K	H	G	A	T	V	V	V	D	N	T	Y	.	.	C	T	P	Y	L	Q	R	P	L	E	L	G	A	D	L	V	V	H	S	A	T	Y	L
Template Known Secondary structure	T											.	.	.	T	T								S	S		T	T	T														G	G	G	T								T	T	.	.	T							G	G	G	G	T		S
Template Predicted Secondary structure												.	.	.																																										.	.
Template SS confidence
	138	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A
Query Conservation
Alig confidence		.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	.	.	.	.	G	H	G	D	I	T	A	G	I	V	V	G	S	Q	A	L	V	D	R	I	R	L	Q	G	L	K	D	M	T	G	A	V	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	D	A	A	L	L	M	R	G	I	K	T	L	N	L	R	M	D	R	H	C	A	N	A
Template Known Secondary structure	S	.	.	.	.		S	S	S																			T						T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure		.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	214					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.		.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.														.	.	.	.	.	.	850	.
Predicted Secondary structure																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	.	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	T	M	S	F	P	V	.	.	.	.
Query Conservation																		.																																						.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence																		.															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																	.	.	.	.	.	.
Template Sequence	Q	V	L	A	E	F	L	A	R	Q	P	Q	V	E	L	I	H	Y	P	Q	P	G	G	M	I	A	F	E	L	K	G	G	.	.	.	.	.	.	I	G	A	G	R	R	F	M	N	A	L	Q	L	F	S	R	A	V	S	L	G	D	A	E	S	L	A	Q	H	P	A	S	M	T	H	S	S	Y	T	P	E	E
Template Known Secondary structure									T		T	T										T	T							T	T		.	.	.	.	.	.												S	S	S				S			S		S	S						G	G	G	T	T	T	S	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.							.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

								852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I
Query Conservation	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	A	H	Y	G	I	S	E	G	L	V	R	L	S	V	G	L	E	D	I	D	D	L	L	A	D	V	Q	Q	A	L	K	A	S
Template Known Secondary structure				T	T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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