Job Description P33195 Confidence 99.87% Date Thu Jan 5 11:51:15 GMT 2012 Rank 27 Aligned Residues 318 % Identity 14% Template d1c4ka2 SCOP info PLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain Resolution 2.70

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		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	.	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K
Query Conservation																																																																.
Alig confidence																																							.	.	.	.	.	.	.	.																		.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence		P	A	V	A	A	E	K	H	A	A	R	V	Y	N	A	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	.	.	.	.	.	.	.	.	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q	T	N	R
Template Known Secondary structure														T	T		S						S	S															.	.	.	.	.	.	.	.		T	T							T	T										T	T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210									.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		627						.	.	630	.	.	.	.	.	.													.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure			.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query SS confidence			.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	G	N	I	D	L	T	D	L	R	.	.	.	.	.	.	.	.	.	.	.	.	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	.	.	.	.	.	.
Query Conservation			.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.
Alig confidence			.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																											.																					.	.	.	.	.	.
Template Conservation																																																							.
Template Sequence		N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	N	.	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A	W	V	G	Y	E	Q
Template Known Secondary structure			T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B		T	T	S					.									G	G	G	B	S							T	T			G	G	G
Template Predicted Secondary structure																																																							.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
								684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																			.	.	.	.	.														.	.																			.
Template Conservation																																										.	.	.	.	.														.	.																			.
Template Sequence		F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	.	.	.	.	.	Q	I	H	K	K	D	S	H	I	K	G	Q	L	.	.	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	.	S
Template Known Secondary structure		S	S	G	G	G	G	G	G		T	T	S						T	T	S													S	S			T	T			.	.	.	.	.							G	G	G	T	T	S	T	.	.	T															S		S	.	S
Template Predicted Secondary structure																																										.	.	.	.	.														.	.																			.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.
		758	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R	F	E	K	G	A
Template Known Secondary structure																		S																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B			T	T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
									812	.	.	.	.	.	.	.	820	.	.	.																.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	H	E	C	I	L	D	I	R	P	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D
Query Conservation		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																																							.	.	.
Template Sequence		K	W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	.	.	.	I	P	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E	T	P	A	K	M	N
Template Known Secondary structure		T	T	T			T	T			T	T						T	T							S	S			T	T	T	T				S	S														T	T		.	.	.			S				S	S								T	T
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.				530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	I	T	Q	L	L	Q	L	Q	R	L	I	E	E	D
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions