Job Description P33195 Confidence 99.63% Date Thu Jan 5 11:51:15 GMT 2012 Rank 94 Aligned Residues 325 % Identity 16% Template c3ruyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis Resolution 2.65 Å

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		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	.	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y
Query Conservation																														.
Alig confidence																.	.	.	.											.														.	.	.	.	.	.	.																															.
Template Conservation																.	.	.	.																									.	.	.	.	.	.	.																															.
Template Sequence		D	L	L	S	A	Y	S	A	V	N	Q	G	H	R	.	.	.	.	H	P	K	I	I	N	A	L	I	D	Q	A	N	R	V	T	L	T	S	R	A	F	H	S	.	.	.	.	.	.	.	D	Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	V	L	P	M	N	T	G	A	E	A	V	E	.
Template Known Secondary structure			S	S					T		T	T		B	T	.	.	.	.												T	T	T		S				T	T	S			.	.	.	.	.	.	.	S	S													T		S						S	S							.
Template Predicted Secondary structure																.	.	.	.																									.	.	.	.	.	.	.																															.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.								.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		578	.	580	.	.	.	.	.	.	.	.	.	590				.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.													.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure															.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	L	L	A	I	R	H	Y	H	E	S	R	.	.	.	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A
Query Conservation															.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.											.	.
Template Conservation																																																																	.	.	.	.	.											.	.
Template Sequence		T	A	I	K	T	A	R	R	W	A	Y	D	V	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	T	M	G	A	V	S	M	S	S	N	E	E	Y	K	R	G	F	G	P	M	L	P	G	I	I	V	I	P	Y	G	.	.	.	.	.	D	L	E	A	L	K	A	A	I	T	.	.
Template Known Secondary structure														T	S				T	T								T	T					S	S					T	T		S		T	T	T	T	T	T			S			S	S						T	T	.	.	.	.	.											.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.											.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.						.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.				.	.	710	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																																		.	.	.
Query SS confidence																		.	.	.	.	.																																																		.	.	.
Query Sequence		G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	.	.	.	.	.	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	.	.	.	K	T	F	C	I	P	H
Query Conservation																		.	.	.	.	.																																																		.	.	.
Alig confidence		.																.	.	.	.	.					.																						.	.	.	.															.					.	.	.
Template Conservation		.																									.																						.	.	.	.															.
Template Sequence		.	P	N	T	A	A	F	I	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	.	L	K	E	A	L	E	V	C	K	K	E	N	V	L	F	V	A	D	E	I	Q	.	.	.	.	T	G	L	G	R	T	G	K	V	F	A	C	D	W	.	D	N	V	T	P	D	M	Y	I	L	G	A	L	G
Template Known Secondary structure		.	T	T								S	S	B	T	T	T	T	S	B				T	T		.											T	T								T	T	.	.	.	.	T	T	T	T	T	T	S	S	S	S	G	G	G	G	.	G	T				S							T	T
Template Predicted Secondary structure		.																									.																						.	.	.	.															.
Template SS confidence
			185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S
Query Conservation
Alig confidence							.															.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation							.															.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence		G	G	V	F	P	.	I	S	C	A	A	A	N	R	D	I	L	G	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	G	S	H	G	S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	V	L	E	E	E	K	L	T	.	.	.	E	R	S	L	Q	L	G	E	K	L	V	G
Template Known Secondary structure		T	T	T	S		.												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S			S	S	T	T																		T	T			.	.	.
Template Predicted Secondary structure							.															.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
		259	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.														.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.
		795	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850		.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D
Query Conservation																																																										.
Alig confidence																												.	.	.	.	.	.	.	.																		.	.	.	.		.
Template Conservation																												.	.	.	.	.	.	.	.																		.	.	.	.
Template Sequence		Q	L	K	E	I	D	N	P	M	I	T	E	V	R	G	K	G	L	F	I	G	I	E	L	N	E	.	.	.	.	.	.	.	.	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	L	C	K	.	.	.	.	E	T	H	E	N	V	I	R	I	A	P	P	L	V	I	S	E	E	D	L	E	W	A	F	Q
Template Known Secondary structure				T	T				T	T								T	T							S	S	.	.	.	.	.	.	.	.		S											T					.	.	.	.			T	T	T								T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.																		.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.									.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		874	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	L	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	K	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions