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Job DescriptionP33195
Confidence99.21%DateThu Jan 5 11:51:15 GMT 2012
Rank201Aligned Residues312
% Identity13%Templatec3qguB_
PDB info PDB header:transferaseChain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   532.......540.........550.........560.........570.........580.........590.........600.........610.
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Query Sequence  ELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVCMQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPAS
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Template Sequence  GYSGYGA. . . EQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMMF. . . . . . . . GSKPTVAVQDPSYPVYVDT
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   103...... 110.........120.........130.........140.........150.. .......160.........170.
 
   612.......620........ .630.........640.........650...... ...660 .........670.........680.
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Query Sequence  AHMAGMQVVVVACDKNG. . . . . . NIDLTDLRAKAEQAGDNLSCIMVTYPST. HGVY. . . EETIREVCEVVHQFGGQVYLD
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Template Sequence  SVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA. . KRTDIIFFCSPNNPTGAAATRAQ. LTELVNFARKNGSILVYD
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B
SSSBTT

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   172.......180.........190.........200....... ..210.........220.........230 .........240........
 
   682... ....690.........700.........710.........720.........730.........740.........750....
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Query Sequence  GANM. . . . . . . NAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSA
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Template Sequence  AAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT. . . . GVRLGWTVVPKALKYANGEPV. . . . . HADWNRVMTTC
Template Known Secondary structure 
TTGGG


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SSGGGSTTGGGT
SGGGT
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TT
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   249250.........260.........270.........280....... ..290.........300........ .310.........
 
   755....760.........770.........780.........790.........800.........810.........820.........830....
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Query Sequence  APFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQDAFPVLYTGRDGRVAHECILDIRPLKEETGISELDIA
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Template Sequence  FNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM. GFSVYGGDDAPY. . IWVGFP. . . . . . GKPSWDVF
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TST.T

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   320.........330.........340.........350.........360.... .....370...... ...380.. .......390
 
   835.... 840.... .....850. ........860.........870.......
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Query Sequence  KRLID. YGFHA. PTMSFPV. . AGTLMVEPTESESKVELDRFIDAMLA
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Template Sequence  AEILERCNIVTTPGSGYGPAGEGFVRASAF. . GSRENILEAVRRFKE
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GGGG
GGGTT

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   391........400.........410.........420 .........430.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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