Job Description P33195 Confidence 99.14% Date Thu Jan 5 11:51:15 GMT 2012 Rank 206 Aligned Residues 327 % Identity 12% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.						.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H
Query Conservation																																			.	.	.	.	.
Alig confidence										.	.	.																							.	.	.	.	.																								.	.	.	.	.	.
Template Conservation										.	.	.																																																			.	.	.	.	.	.
Template Sequence		K	Y	N	K	E	Y	P	P	.	.	.	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S	L	H	I	G	F	E	F	L	H	L	W	.	.	.	.	.	.	M	P	K	A	E	F	Y	M	P	S	T	T	W
Template Known Secondary structure		T	S			S				.	.	.	T	T																T	T						T	T								S																	.	.	.	.	.	.		T	T							S	S
Template Predicted Secondary structure										.	.	.																																																			.	.	.	.	.	.
Template SS confidence
		64	.	.	.	.	.	70	.				.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.							.	.	.	.	.	.	.	.	130	.	.	.	.
		606	.	.	.	610	.	.	.	.					.	.	.	.	.	620	.	.	.				.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.		.	.	.	.	.	660	.	.			.	.	.	.	.	.	.	670	.	.	.	.	.
Predicted Secondary structure											.	.	.	.										.	.	.																																.									.	.
Query SS confidence											.	.	.	.										.	.	.																																.									.	.
Query Sequence		G	T	N	P	A	S	A	H	M	.	.	.	.	A	G	M	Q	V	V	V	V	A	.	.	.	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	.	S	T	H	G	V	Y	E	E	.	.	T	I	R	E	V	C	E	V	V	H	Q	F	G
Query Conservation											.	.	.	.										.	.	.																																.									.	.
Alig confidence											.	.	.	.										.	.	.																																.									.	.
Template Conservation
Template Sequence		P	N	H	Y	G	I	Y	D	K	V	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K
Template Known Secondary structure		T												T	T	T	S								B		T	T	S		S	S	B												S		T	T							S	S	S		T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		676	.	.	.	680	.	.	.	.										.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720			.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		G	Q	V	Y	L	D	G	A	N	.	.	.	.	.	.	.	.	.	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	.	.	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G
Query Conservation											.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence											.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.					.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S	K	N	F	.	.	.	.	.	.	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A
Template Known Secondary structure									S		T	T	T	S	S	S						T										T										T	T	T	S	.	.	.	.	.	.			G	G	G											S		S	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.							.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.								.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.
Query Sequence		M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	.	.	.	.	.	.	.	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L
Query Conservation																																			.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.																							.														.	.
Template Conservation																																																																.														.	.
Template Sequence		M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R	I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	.	K	T	P	G	P	G	S	K	G	T	W	D	H	.	.	I	L
Template Known Secondary structure												T	T	T	S	S														T	S																																T	.	T				S	T	T	T	T			T		.	.
Template Predicted Secondary structure																																																																.														.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.			.	.
		818	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I
Query Conservation
Alig confidence																														.	.	.	.	.	.											.
Template Conservation																														.	.	.	.	.	.											.
Template Sequence		T	A	I	G	M	F	T	F	T	G	L	T	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	.	.	.	.	.	.	K	A	G	G	R	M	S	M	C	G	.	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K	L
Template Known Secondary structure					S	S																							B	.	.	.	.	.	.	T	G	G	G				G	G	G	.			T	T	T															S
Template Predicted Secondary structure																														.	.	.	.	.	.											.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.							.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions