Phyre 2 alignment of P33195 with c3m5uA

Job Description P33195
Confidence 99.43% Date Thu Jan 5 11:51:15 GMT 2012

Rank 157 Aligned Residues 307

% Identity 12% Template c3m5uA_

PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.				.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.
Predicted Secondary structure																							.	.	.																																																.	.
Query SS confidence																							.	.	.																																																.	.
Query Sequence	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	.	.	S	A	H	M	A	G
Query Conservation																							.	.	.																																																.	.
Alig confidence																							.	.	.																					.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A	S	L	Q	F	A	X	I	P	X	N	L	.	.	.	.	.	.	.	.	.	A	L	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G
Template Known Secondary structure	S																			T			T	T							S	S														.	.	.	.	.	.	.	.	.			S	S								S													T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.										.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

	617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.		.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	.	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G
Query Conservation																																										.
Alig confidence																.									.	.	.															.						.				.	.	.	.	.	.												.	.	.
Template Conservation																.									.	.	.																					.				.	.	.	.	.	.												.	.	.
Template Sequence	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	.	H	I	P	R	V	E	F	S	.	.	.	D	N	A	D	Y	A	Y	I	C	S	N	N	T	I	Y	G	T	Q	Y	Q	.	N	Y	P	.	.	.	.	.	.	K	T	K	T	P	L	I	V	D	A	S	.	.	.	S	D	F	F	S	R	K	V	D
Template Known Secondary structure										T	T	T	T	S		.	S								.	.	.	T	T	S	S						S			T	T	T	T				S	.	S			.	.	.	.	.	.			S	S							G	.	.	.	G	G	T	T	S	S
Template Predicted Secondary structure																.									.	.	.																					.				.	.	.	.	.	.												.	.	.
Template SS confidence
	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.							.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.

	696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A
Query Conservation
Alig confidence																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence	F	S	N	I	A	L	F	Y	G	G	V	Q	K	N	A	.	.	.	.	.	.	G	I	S	G	L	S	C	I	F	I	R	K	D	X	L	E	R	S	K	N	K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N
Template Known Secondary structure		T	T								T	T	T	T	S	.	.	.	.	.	.	S		T	T																T					G	G	G								T	T	T		S	S																			T
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	776		.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence	E	.	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T
Query Conservation		.
Alig confidence		.																																													.	.																													.
Template Conservation																																															.	.																													.
Template Sequence	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	N	G	F	Y	K	G	H	A	D	K	K	D	R	S	L	X	N	V	S	F	N	.	.	I	A	K	N	K	D	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	.	L	G	G
Template Known Secondary structure	T	T																						T	S	T	T	S				S	S		G	G	G	B		S	S						.	.		S	S		T	T												T	T					B			T	T	.	T		S
Template Predicted Secondary structure																																															.	.																													.
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.

	855	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E	F	X	K	E	F	Q	G
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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