Job Description P33195 Confidence 99.48% Date Thu Jan 5 11:51:15 GMT 2012 Rank 137 Aligned Residues 333 % Identity 13% Template c3jtxB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution Resolution 1.91 Å

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		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.							.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	.	.	.	.	.	.	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																																					.	.	.																		.	.	.	.	.	.																.	.	.	.
Template Conservation																																					.	.	.																																							.	.	.	.
Template Sequence		X	E	A	V	P	L	H	I	G	E	P	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	E	L	E	K	Y	P	L	.	.	.	T	A	G	L	P	E	L	R	Q	A	C	A	N	W	L	K	R	R	Y	D	G	L	T	V	D	A	D	N	E	I	L	P	V	L	G	S	R	E	.	.	.	.
Template Known Secondary structure							T	T			S			S													T	G	G	G	G	G	S				.	.	.	T	T																	T	T	T					T	T	T	S					S	S				.	.	.	.
Template Predicted Secondary structure																																					.	.	.																																							.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.		.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure																																																					.																												.
Query SS confidence																																																					.																												.
Query Sequence		A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	.	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	.
Query Conservation																																																					.																												.
Alig confidence																.	.																																				.													.	.	.													.
Template Conservation																.	.																																																	.	.	.
Template Sequence		A	L	F	S	F	V	Q	T	V	L	N	P	V	G	.	.	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	A	P	S	F	N	P	D	W	R	S	I	S	E	E	V	W	.	.	.	K	R	T	K	L	V	F	V	C	S	P	N	N
Template Known Secondary structure																.	.										S												T	T										T	T	T					G	G	G	S						.	.	.	T	T								S	S		T
Template Predicted Secondary structure																.	.																																																	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.
					656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.											.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure		.	.	.																														.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																														.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	.	.	.	.	.	.	.	.	.	.	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G
Query Conservation		.	.	.																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.								.																						.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation												.																																																													.	.	.	.
Template Sequence		P	S	G	S	V	L	D	L	D	G	.	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R	S	R	Q	K	L	L	X	F	T	S	L	S	R	S	N	V	P	.	.	.	.	G	L	R	S	G
Template Known Secondary structure		T	T									.																				T	T	T	T			S	T	T													T	T				T	T											S		G	.	.	.	.	G	G
Template Predicted Secondary structure												.																																																													.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	A	G	D	A	E	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	L	L	Y	R	T	Y	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	E	Q	H	V	I	D	N	R	R	L	Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	D	V
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T																																								T	T	T	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.																.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840		.	.	.	.		.	.	.	.	.									850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure																																								.					.						.	.	.	.	.	.	.	.
Query SS confidence																																								.					.						.	.	.	.	.	.	.	.
Query Sequence		L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	.	G	F	H	A	.	P	T	M	S	F	.	.	.	.	.	.	.	.	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I
Query Conservation																																								.					.						.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																.					.						.	.	.	.	.	.	.	.												.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																														.	.
Template Sequence		K	L	P	D	A	S	F	Y	I	W	L	K	V	.	.	.	.	.	.	.	.	.	.	P	D	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G	Y	V	R	I	A	L	V	.	.	A	D	V	A	T	C	V	K	A	A
Template Known Secondary structure					S	S	S	S							.	.	.	.	.	.	.	.	.	.	T	T	S																				G	G	G	G	S			B	T	T	B		T	T	T	T								.	.	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																														.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.											.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.
		873	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	M	L	A	I	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	I	V	S	L	Y	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions