Job Description P33195 Confidence 99.64% Date Thu Jan 5 11:51:15 GMT 2012 Rank 90 Aligned Residues 357 % Identity 15% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560			.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	.	.	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E
Query Conservation																																																																.	.
Alig confidence																.	.	.	.												.	.										.	.	.																				.	.
Template Conservation																.	.	.	.												.	.										.	.	.
Template Sequence		D	G	P	A	G	M	W	C	A	Q	V	G	Y	G	.	.	.	.	R	R	E	I	V	D	A	M	A	H	Q	.	.	A	M	V	L	P	Y	A	S	P	.	.	.	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	G	D	L	N	R	I	F	F	T	T	G	G	S	T	A	V	D
Template Known Secondary structure			T	T					T		T	T		B		.	.	.	.												.	.									T	.	.	.	T	T															T	T	S	S	T	T								S	S
Template Predicted Secondary structure																.	.	.	.												.	.										.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.		.	.	.	.	.	610	.	.	.	.	.	.	.	.													.	620	.	.	.	.	.	.	.	.	.	630												.	.
Predicted Secondary structure																														.															.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.															.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	.	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	V	V	V	V	A	C	D	K	N	G	N	I	.	.	.	.	.	.	.	.	.	.	.	D	L
Query Conservation																														.															.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																												.															.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	K	K	R	I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A	F	L	D	D	L	V
Template Known Secondary structure		.													T	T		T	T								T	T					S	S						T				G	G	G		T	T	S					T	T									G	G	G		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		633	.	.	.	.	.	.	640	.	.	.		.	.	.	.	.	.	650	.	.		.	.	.	.	.	.	.	660	.	.				.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.						.	700	.	.
Predicted Secondary structure													.										.											.	.	.																																					.	.	.	.	.
Query SS confidence													.										.											.	.	.																																					.	.	.	.	.
Query Sequence		T	D	L	R	A	K	A	E	Q	A	G	.	D	N	L	S	C	I	M	V	T	.	Y	P	S	T	H	G	V	Y	E	E	.	.	.	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	.	.	.	.	.	A	D	V	S
Query Conservation													.										.											.	.	.																																					.	.	.	.	.
Alig confidence													.										.											.	.	.																						.	.	.	.												.	.	.	.	.
Template Conservation																																																										.	.	.	.
Template Sequence		Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	.	.	.	.	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G	V	V
Template Known Secondary structure													G	G	G								S	S	B	T	T	T	T	S	B				T	T												T	T								T	.	.	.	.	T	T	T	T	T	T	T	S	S	S						T	T
Template Predicted Secondary structure																																																										.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S
Query Conservation
Alig confidence		.	.																																		.	.	.	.	.	.																																					.	.	.
Template Conservation		.	.																																		.	.	.	.	.	.																																					.	.	.
Template Sequence		.	.	P	D	I	I	T	F	A	K	G	V	T	S	G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E	.	.	.	.	.	.	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	L	M	E	R	E	G	I	V	.	.	.
Template Known Secondary structure		.	.		S						G	G	G	G	T	T	S	S														T	T	S	G	G	.	.	.	.	.	.	G		T	T								T	T	T	T																		T	T			.	.	.
Template Predicted Secondary structure		.	.																																		.	.	.	.	.	.																																					.	.	.
Template SS confidence
				281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		783	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	V	A	G	T	L	M	V	E	P	T	E	S
Query Conservation
Alig confidence																																																																	.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		D	Q	A	R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	G	V	A	E	T	R	S	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	R	.	.	.	.	P	L	G	D	L	C	V	I	S	P	P	L	I
Template Known Secondary structure																	T	T	T	T	S	T	T								T	T																											T	T					.	.	.	.			T	T								T	T
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.					.	.	.	.	.	.	.	420	.	.	.	.	.
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T	E	V	S	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions