Job Description P33195 Confidence 100.00% Date Thu Jan 5 11:51:15 GMT 2012 Rank 5 Aligned Residues 371 % Identity 17% Template c3hl2D_ PDB info PDB header:transferase Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase; PDBTitle: the crystal structure of the human sepsecs-trnasec complex Resolution 2.81 Å

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		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.						.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.			.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.																		.	.
Query SS confidence																																														.	.	.	.	.																		.	.
Query Sequence		S	E	T	E	M	M	R	Y	M	H	S	L	E	R	K	D	L	A	L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	A	A	E	M	I	P	I	T	W	.	.	.	.	.	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	.	.	Y	Q	Q	M	I	A	Q	L	A	D	W	L
Query Conservation																																														.	.	.	.	.																		.	.
Alig confidence																																														.	.	.	.	.												.						.	.
Template Conservation																																																														.
Template Sequence		D	E	S	T	L	E	L	F	L	H	E	L	A	I	M	D	S	N	N	F	L	G	N	C	G	V	G	E	R	E	G	R	V	A	S	A	L	V	A	R	R	H	Y	R	F	I	H	G	I	G	R	S	G	D	I	S	A	V	Q	P	.	K	A	A	G	S	S	L	L	N	K	I	T	N	S	L	V	L	D	I
Template Known Secondary structure															T	T	B	G	G	G		S	S					S	S						S								T	T	T			S		B	S	B	T	T	B	T	T	S			T	.	T	B
Template Predicted Secondary structure																																																														.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		557	.	.	560	.	.	.				.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.				.	.	.	.	.	630
Predicted Secondary structure									.	.	.																																																														.	.	.
Query SS confidence									.	.	.																																																														.	.	.
Query Sequence		V	K	L	T	G	Y	D	.	.	.	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	.	.	.	D	K	N	G	N	I
Query Conservation									.	.	.																																																														.	.	.
Alig confidence									.	.	.																								.	.	.	.	.																																		.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		I	K	L	A	G	V	H	T	V	A	N	C	F	V	V	P	M	A	T	G	M	S	L	T	L	C	F	L	T	L	R	H	K	.	.	.	.	.	R	P	K	A	K	Y	I	I	W	P	R	I	D	Q	K	S	C	F	K	S	M	I	T	A	G	F	E	P	V	V	I	E	N	V	L	E	G	D	E	L	R	T
Template Known Secondary structure						T		T	T								S	S																	.	.	.	.	.		T	T																					T	T												T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		631	.	.	.	.	.	.	.	.	640	.	.		.	.	.	.	.	.	.	650	.	.	.	.	.	.	.		.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.						.	.	.	.	.	.	700	.	.	.
Predicted Secondary structure														.																.																																					.	.	.	.	.
Query SS confidence														.																.																																					.	.	.	.	.
Query Sequence		D	L	T	D	L	R	A	K	A	E	Q	A	.	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	.	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	.	.	.	.	.	P	G	F	I	G	A	D	V	S	H
Query Conservation														.																.																																					.	.	.	.	.
Alig confidence														.																.						.																															.	.	.	.	.
Template Conservation																																				.
Template Sequence		D	L	K	A	V	E	A	K	V	Q	E	L	G	P	D	C	I	L	C	I	H	S	T	T	S	C	F	A	P	R	V	P	D	R	.	L	E	E	L	A	V	I	C	A	N	Y	D	I	P	H	I	V	N	N	A	Y	G	V	Q	S	S	K	C	M	H	L	I	Q	Q	G	A	R	V	G	R	I	D	A	F	V
Template Known Secondary structure															G	G	G								S	S			T	T	B					.												T								T	T		T	T															S
Template Predicted Secondary structure																																				.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	L	D	K	N	F	M	V	P	V	G	G	A	I	I	A	G	F	N	D	S	F	I	Q	E	I	S	K	M	Y	P	G	R	A	S	A	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	D	V	L	I	T	L	L	S	L	G	S	N	G	Y	K	K	L	L	K
Template Known Secondary structure								S				S	S							S											T	S		S		B		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.																					.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.						.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
Predicted Secondary structure																	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	.	.	.	.	.	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.														.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.
Template Sequence		E	R	K	E	M	F	S	Y	L	S	N	Q	I	K	K	L	S	E	A	Y	N	E	R	L	L	H	T	P	H	N	P	I	S	.	.	.	L	A	M	T	L	K	T	L	D	E	H	R	D	K	A	V	T	Q	L	G	S	M	L	F	T	R	Q	V	S	G	A	R	V	V	P	L	G	S	M	Q	T	V	S	G
Template Known Secondary structure																					T	T			B				T	T		S	S		.	.	.						T	T			T	T	T	S													T	T			S						S	S						T	T
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
				842	.	.	.	.	.	.	.	850			.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
Predicted Secondary structure		.	.										.	.
Query SS confidence		.	.										.	.
Query Sequence		.	.	F	H	A	P	T	M	S	F	P	.	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I	D	A	M	L	A	I	R	A	E	I	D	Q
Query Conservation		.	.										.	.
Alig confidence		.	.										.	.
Template Conservation
Template Sequence		Y	T	F	R	G	F	M	S	H	T	N	N	Y	P	C	A	Y	L	N	A	A	S	A	I	G	M	K	M	Q	D	V	D	L	F	I	K	R	L	D	R	C	L	K	A	V	R	K
Template Known Secondary structure						S	T	T	T	T	S	S			S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.