Job Description P33195 Confidence 99.84% Date Thu Jan 5 11:51:15 GMT 2012 Rank 34 Aligned Residues 318 % Identity 22% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.						.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	A	V	C	M	Q	P	N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	.	.	.	.	.	N	P	A	S	A	H	M	A	G	M	Q	V	V	V
Query Conservation																																																															.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.
Template Sequence		V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A	Q	A	N	A	A	V	L	H	A	L	M	.	.	.	.	.	.	.	.	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F
Template Known Secondary structure																T		S							S	S														.	.	.	.	.	.	.	.		T	T								G	G	G	T			G	G	G	T		T	T	S					S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		622	.	.	.		.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.				.	.	.	.	.	690	.	.	.	.	.	.	.
Predicted Secondary structure						.																																																												.	.	.
Query SS confidence						.																																																												.	.	.
Query Sequence		V	A	C	D	.	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I	M	V	T	Y	P	S	T	H	G	V	Y	E	E	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	.	.	.	M	N	A	Q	V	G	I	T	S	P	G	F	I
Query Conservation						.																																																												.	.	.
Alig confidence						.																.	.	.																				.																						.	.	.
Template Conservation																						.	.	.																				.
Template Sequence		Y	G	V	D	P	A	T	H	L	I	D	M	D	A	V	R	A	T	A	L	.	.	.	E	F	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	D	.	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H
Template Known Secondary structure						T	T	T		S												.	.	.					S							S	S			S				.												T								T	T	T						T	T	S	S			S	T	T	T
Template Predicted Secondary structure																						.	.	.																				.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		698	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	D	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G	P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G
Query Conservation
Alig confidence		.											.		.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.											.		.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	A	D	V	V	S	T	T	V	H	T	.	L	.	.	.	.	.	.	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	G	P	.	.	.	.	.	.	.	.	.	.	.	.	L	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E
Template Known Secondary structure		.		S									.		.	.	.	.	.	.				S								G	G	G									T	T	T	T		S	S		.	.	.	.	.	.	.	.	.	.	.	.																T	S
Template Predicted Secondary structure		.											.		.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			218	.	220	.	.	.	.	.	.	.		.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.													.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		778	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.							.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure																					.	.	.	.	.	.																																																							.
Query SS confidence																					.	.	.	.	.	.																																																							.
Query Sequence		L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	.	.	.	.	.	.	Q	D	A	F	P	V	L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	P	T	M	S	F	P	.
Query Conservation																					.	.	.	.	.	.																																																							.
Alig confidence																					.	.	.	.	.	.									.	.	.														.	.	.	.																											.
Template Conservation																																			.	.	.														.	.	.	.
Template Sequence		F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S	.	.	.	G	G	T	D	V	H	L	V	L	V	D	L	R	.	.	.	.	D	S	P	L	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N
Template Known Secondary structure																					S	S						T	T				G	G	.	.	.	G	S		S	S	S							T	.	.	.	.	T	S	S													T	T									T	T
Template Predicted Secondary structure																																			.	.	.														.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.					.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
								851	.	.	.	.	.	.	.	.	860	.	.	.	.					.	.	.	.	.	870	.	.	.													.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	V	A	G	T	L	M	V	E	P	T	E	S	E	S	.	.	.	.	K	V	E	L	D	R	F	I	D	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	A	I	R	A	E	I	D	Q	V	K	A	G	V	W	P	L	E	D	N	P	L	V	N	A	P	H	I	Q	S	E	L	V
Query Conservation		.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.															.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D	I	I	A	T	A	L	A	T	G	S	S	V	D	V	S	A	L	K	D	R	A	T	R	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S		T	T	T		S													T																			S	G	G	G																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		909	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	W	A	H	P	Y	S	R	E	V	A	V	F	P	A	G	V	A	D	K	Y	W	P	T	V	K	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	L	Y	D	G	L	E	E	W	S	L	V	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		S		S	S	T	T	G	G	G			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions