Job Description P33195 Confidence 99.10% Date Thu Jan 5 11:51:15 GMT 2012 Rank 211 Aligned Residues 347 % Identity 14% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

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		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.									.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.					.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.																																														.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.																																														.	.	.	.
Query Sequence		L	N	Q	A	M	I	P	L	G	S	C	T	M	K	L	N	A	.	.	.	.	.	.	.	.	A	A	E	M	I	P	I	T	W	P	E	F	A	E	L	H	P	F	C	P	P	E	Q	A	E	G	Y	Q	Q	M	I	A	Q	L	A	D	W	L	V	K	L	T	G	Y	D	.	.	.	.	A	V	C	M	Q	P
Query Conservation																			.	.	.	.	.	.	.	.																																														.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.																					.	.	.																							.	.	.	.
Template Conservation																																															.	.	.
Template Sequence		L	N	D	G	A	I	X	L	G	G	G	N	P	A	H	I	P	A	X	Q	D	Y	F	Q	T	L	L	T	D	X	V	E	S	G	K	A	A	D	A	L	C	N	Y	D	G	.	.	.	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G	W	D	I	E	P	Q	N	I	A	L	T	N
Template Known Secondary structure										S																									T								S	T	T		.	.	.	T	T	S																						G	G	G					S
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	G	A	Q	G	E	Y	A	G	L	L	A	I	R	H	Y	H	E	S	R	N	E	G	H	R	D	I	C	L	I	P	A	S	A	H	G	T	N	P	A	S	A	H	M	A	G	M	Q	V	V	V	V	A	C	D	K	N	G	N	I	D	L	T	D	L	R	A	K	A	E	Q	A	G	D	N	L	S	C	I
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																																																	.	.	.
Template Conservation																		.	.	.	.	.	.	.																																																	.	.	.
Template Sequence		G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	.	.	.	.	.	.	.	S	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	.	.	.	E	E	T	G	X	I
Template Known Secondary structure															S	B		.	.	.	.	.	.	.			B					S	S																							G	G	G								G	G	G					.	.	.	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120								.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.
		650	.	.	.	.	.			.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700					.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure								.	.								.																																							.	.	.	.
Query SS confidence								.	.								.																																							.	.	.	.
Query Sequence		M	V	T	Y	P	S	.	.	T	H	G	V	Y	E	E	.	T	I	R	E	V	C	E	V	V	H	Q	F	G	G	Q	V	Y	L	D	G	A	N	M	N	A	Q	V	G	I	T	S	P	G	F	I	G	A	D	.	.	.	.	V	S	H	L	N	L	H	K	T	F	C	I	P	H	G	G	G	G	P	G	M	G
Query Conservation								.	.								.																																							.	.	.	.
Alig confidence								.	.								.																																							.	.	.	.											.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	I	L	C	X	S	L	S	K	L	G	.	.	.	.	.	L	P	G	S	R	C	G
Template Known Secondary structure					S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	T	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	G	V	K	A	H	L	A	P	F	V	P	G	H	S	V	V	Q	I	E	G	M	L	T	R	Q	G	A	V	S	A	A	P	F	G	S	A	S	I	L	P	I	S	W	M	Y	I	R	M	M	G	A	E	G	L	K	K	A	S	Q	V	A	I	L	N	A	N	Y	I	A	S	R	L	Q	D	A	F	P	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		I	I	I	A	N	D	K	T	I	T	A	I	A	N	.	.	.	.	.	.	.	X	N	G	I	I	S	L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A	I	I	R	R	Y	L	S	E	E	R	C	L
Template Known Secondary structure																.	.	.	.	.	.	.											S												T	T									T																						T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.		.	.	.	.	.										850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure																																												.						.	.	.	.	.	.	.	.	.
Query SS confidence																																												.						.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	T	G	R	D	G	R	V	A	H	E	C	I	L	D	I	R	P	L	K	E	E	T	G	I	S	E	L	D	I	A	K	R	L	I	D	Y	G	F	H	A	.	P	T	M	S	F	.	.	.	.	.	.	.	.	.	P	V	A	G	T	L	M	V	E	P	T	E	S	E	S	K	V	E	L	D	R	F	I
Query Conservation																																												.						.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.							.	.	.	.																					.						.	.	.	.	.	.	.	.	.												.	.
Template Conservation											.	.	.							.	.	.	.																																															.	.
Template Sequence		I	H	K	P	E	G	A	I	F	.	.	.	L	W	L	W	F	K	.	.	.	.	D	L	P	I	T	T	E	L	L	Y	Q	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y	V	.	.	P	E	P	D	K	I	E	A	G	V
Template Known Secondary structure							B	S	S		.	.	.						T	.	.	.	.	T		S	S												T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S		.	.	S
Template Predicted Secondary structure											.	.	.							.	.	.	.																																															.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340				.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.			.	.	.	.	.	.	.	400	.	.
		873	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	M	L	A	I	R	A	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	L	A	E	E	I	E	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions