Job Description P33195 Confidence 98.86% Date Thu Jan 5 11:51:15 GMT 2012 Rank 224 Aligned Residues 344 % Identity 11% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		N	A	L	T	G	Q	I	V	P	K	D	I	Q	L	A	T	P	P	Q	V	G	A	P	A	T	E	Y	A	A	L	A	E	L	K	A	I	A	S	R	N	K	R	F	T	S	Y	I	G	M	G	Y	T	A	V	Q	L	P	P	V	I	L	R	N	M	L	E	.	.	N	P	G	W	Y	T	A	Y	T	P	Y	Q
Query Conservation																																																																				.	.
Alig confidence								.																.	.	.	.																																									.	.											.	.
Template Conservation								.																.	.	.	.																																																					.	.
Template Sequence		E	K	L	I	R	E	.	K	Q	N	E	L	H	I	K	D	L	G	X	A	S	I	.	.	.	.	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	X	G	V	P	G	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	I	Y	P	N	.	.
Template Known Secondary structure								.						T		S		G	G	G				.	.	.	.															T										S			S																	T	G	G	G	S				.	.
Template Predicted Secondary structure								.																.	.	.	.																																																					.	.
Template SS confidence
		7	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		P	E	V	S	Q	G	R	L	E	A	L	L	N	F	Q	Q	V	T	L	D	L	T	G	L	D	M	A	.	.	S	A	S	L	L	D	E	A	T	A	A	A	E	A	M	A	M	A	K	R	V	S	K	L	K	N	A	N	R	F	F	V	A	S	D	V	H	P	Q	T	L	D	V	V	R	T	R	A	E	T	F
Query Conservation																													.	.
Alig confidence		.	.	.																									.	.																																																.	.	.	.
Template Conservation		.	.	.																																																																										.	.	.	.
Template Sequence		.	.	.	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	.	.	.	.
Template Known Secondary structure		.	.	.	T	T																							G	G	G					S														T	T	S		T	T		S								S													.	.	.	.
Template Predicted Secondary structure		.	.	.																																																																										.	.	.	.
Template SS confidence
					80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		195	.	.	.	.	200	.	.	.	.	.	.													.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.																					.			.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.																					.			.	.	.	.	.	.	.	.	.
Query Sequence		G	F	E	V	I	V	D	D	A	Q	K	V	.	.	.	.	.	.	.	.	.	.	.	.	L	D	H	Q	D	V	F	G	V	L	L	Q	Q	V	G	T	.	T	G	E	I	.	.	.	H	D	Y	T	A	L	I	S	E	L	K	S	R	K	I	V	V	S	V	A	.	A	D	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.																					.			.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																	.					.	.	.																					.			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	R	E	K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y
Template Known Secondary structure		T								G	G	G	G		T	T											T	T	T									S	S		T	T	T																			T	T								T	T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
					249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	I	M	A	L	V	L	L	T	A	P	G	K	Q	G	A	D	I	V	F	G	S	A	Q	R	F	G	V	P	M	G	Y	G	G	P	H	A	A	F	F	A	A	K	D	E	Y	K	R	S	M	P	G	R	I	I	G	V	S	K	D	A	A	G	N	T	A	L	R	M	A	M	Q	T	R	E	Q	H	I
Query Conservation		.	.	.
Alig confidence		.	.	.																													.	.	.	.																.	.	.	.
Template Conservation																																	.	.	.	.																.	.	.	.
Template Sequence		S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	.	.	.	.	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	.	.	.	.	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A
Template Known Secondary structure			S	T	T	S	S						G	G	G	T		S												S		G	.	.	.	.	G	G														.	.	.	.		B		G	G	G					S		S	B							T	T
Template Predicted Secondary structure																																	.	.	.	.																.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.										.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		R	R	E	K	A	N	S	N	I	C	T	S	Q	V	L	L	A	N	I	A	S	L	Y	A	V	Y	H	G	P	V	G	L	K	R	I	A	N	R	I	H	R	L	T	D	I	L	A	A	G	L	Q	Q	K	G	L	K	L	R	H	.	.	.	.	.	.	.	.	.	A	H	Y	F	D	T	L	C	V	E	V	A
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		L	S	S	G	A	.	.	.	.	.	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	N	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	G	X
Template Known Secondary structure				S	S	S	.	.	.	.	.																	T	T	S																							T	T	T				S	S				T	T					S	S	S							T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		306	.	.	.	310						.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		397	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	A	G	V	L	T	R	A	E	A	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	S	K	L	I	E	K	F	V	R	Y	G
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions